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chipseq_analysis
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a5928f13
Commit
a5928f13
authored
5 years ago
by
Jeremy Mathews
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add plot profile test. output to experiment QC folder
parent
69aa7720
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workflow/main.nf
+2
-2
2 additions, 2 deletions
workflow/main.nf
workflow/tests/test_plot_profile.py
+18
-0
18 additions, 0 deletions
workflow/tests/test_plot_profile.py
with
20 additions
and
2 deletions
workflow/main.nf
+
2
−
2
View file @
a5928f13
...
...
@@ -463,7 +463,7 @@ peaksDesign = experimentPeaks
//plotProfile
process plotProfile {
publishDir "$outDir/
${task.process}
", mode: 'copy'
publishDir "$outDir/
experimentQC
", mode: 'copy'
input:
...
...
@@ -472,7 +472,7 @@ process plotProfile {
output:
file("
*
.png") into plotProfile
file(".
{
png
,gz}
") into plotProfile
when:
...
...
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workflow/tests/test_plot_profile.py
0 → 100644
+
18
−
0
View file @
a5928f13
#!/usr/bin/env python3
import
pytest
import
os
import
utils
test_output_path
=
os
.
path
.
dirname
(
os
.
path
.
abspath
(
__file__
))
+
\
'
/../output/experimentQC/
'
@pytest.mark.singleend
def
test_plot_singleend
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
plotProfile.png
'
))
@pytest.mark.pairedend
def
test_plot_pairedend
():
assert
os
.
path
.
exists
(
os
.
path
.
join
(
test_output_path
,
'
computeMatrix.gz
'
))
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