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Commit 81054b5c authored by Venkat Malladi's avatar Venkat Malladi
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Fix output directory. #28.

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workflow/main.nf
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...@@ -395,7 +395,7 @@ process consensusPeaks { ...@@ -395,7 +395,7 @@ process consensusPeaks {
// Annotate Peaks // Annotate Peaks
process peakAnnotation { process peakAnnotation {
publishDir "$baseDir/output/${task.process}", mode: 'copy' publishDir "$outDir/${task.process}", mode: 'copy'
input: input:
...@@ -416,7 +416,7 @@ process peakAnnotation { ...@@ -416,7 +416,7 @@ process peakAnnotation {
// Motif Search Peaks // Motif Search Peaks
process motifSearch { process motifSearch {
publishDir "$baseDir/output/${task.process}", mode: 'copy' publishDir "$outDir/${task.process}", mode: 'copy'
input: input:
...@@ -441,7 +441,7 @@ uniqueExperimentsList = uniqueExperiments ...@@ -441,7 +441,7 @@ uniqueExperimentsList = uniqueExperiments
// Calculate Differential Binding Activity // Calculate Differential Binding Activity
process diffPeaks { process diffPeaks {
publishDir "$baseDir/output/${task.process}", mode: 'copy' publishDir "$outDir/${task.process}", mode: 'copy'
input: input:
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