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Commit 805590f5 authored by Venkat Malladi's avatar Venkat Malladi
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Update samtools.

parents faad8b58 6a418e0f
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process { process {
executor = 'slurm' executor = 'slurm'
queue = 'super' queue = 'super'
clusterOptions = '--hold'
// Process specific configuration // Process specific configuration
$checkDesignFile { $checkDesignFile {
...@@ -12,11 +13,11 @@ process { ...@@ -12,11 +13,11 @@ process {
cpus = 32 cpus = 32
} }
$alignReads{ $alignReads{
module = ['python/3.6.1-2-anaconda', 'bwa/intel/0.7.12', 'samtools/1.4.1'] module = ['python/3.6.1-2-anaconda', 'bwa/intel/0.7.12', 'samtools/1.6']
cpus = 32 cpus = 32
} }
$filterReads{ $filterReads{
module = ['python/3.6.1-2-anaconda', 'samtools/1.4.1', 'sambamba/0.6.6', 'bedtools/2.26.0'] module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'sambamba/0.6.6', 'bedtools/2.26.0']
cpus = 32 cpus = 32
} }
$experimentQC { $experimentQC {
...@@ -24,7 +25,7 @@ process { ...@@ -24,7 +25,7 @@ process {
cpus = 32 cpus = 32
} }
$convertReads { $convertReads {
module = ['python/3.6.1-2-anaconda', 'samtools/1.4.1', 'bedtools/2.26.0'] module = ['python/3.6.1-2-anaconda', 'samtools/1.6', 'bedtools/2.26.0']
cpus = 32 cpus = 32
} }
$crossReads { $crossReads {
......
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