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Commit 7b47be12 authored by Venkat Malladi's avatar Venkat Malladi
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Add in software output.

parent 763ac90a
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......@@ -491,17 +491,17 @@ process softwareReport {
input:
file 'trimReads_vf/*txt' from trimReadsVersions.first()
file 'alignReads_vf/*' from alignReadsVersions.first()
file 'filterReads_vf/*' from filterReadsVersions.first()
file 'convertReads_vf/*' from convertReadsVersions.first()
file 'crossReads_vf/*' from crossReadsVersions.first()
file 'callPeaksMACS_vf/*' from callPeaksMACSVersions.first()
file 'consensusPeaks_vf/*' from consensusPeaksVersions.first()
file 'peakAnnotation_vf/*' from peakAnnotationVersions.first()
file 'motifSearch_vf/*' from motifSearchVersions.first().ifEmpty()
file 'diffPeaks_vf/*' from diffPeaksVersions.first().ifEmpty()
file 'experimentQC_vf/*' from experimentQCVersions.first()
file trimReads_vf from trimReadsVersions.collect().first()
file alignReads_vf from alignReadsVersions.collect().first()
file filterReads_vf from filterReadsVersions.collect().first()
file convertReads_vf from convertReadsVersions.collect().first()
file crossReads_vf from crossReadsVersions.collect().first()
file callPeaksMACS_vf from callPeaksMACSVersions.collect().first()
file consensusPeaks_vf from consensusPeaksVersions.collect().first()
file peakAnnotation_vf from peakAnnotationVersions.collect().first()
file motifSearch_vf from motifSearchVersions.collect().first().ifEmpty()
file diffPeaks_vf from diffPeaksVersions.collect().first().ifEmpty()
file experimentQC_vf from experimentQCVersions.collect().first()
output:
......@@ -512,16 +512,7 @@ process softwareReport {
"""
echo $workflow.nextflow.version > version_nextflow.txt
python3 $baseDir/scripts/generate_references.py -r $references -o software_references
python3 $baseDir/scripts/generate_versions.py -f $trimReads_vf \
$alignReads_vf \
$filterReads_vf \
$convertReads_vf \
$crossReads_vf \
$callPeaksMACS_vf \
$consensusPeaks_vf \
$motifSearch_vf \
$diffPeaks_vf \
$experimentQC_vf \
python3 $baseDir/scripts/generate_versions.py -f version*txt \
version_nextflow.txt \
-o software_versions
......
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