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Commit 72ce1955 authored by Venkat Malladi's avatar Venkat Malladi
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Add in nextflow version.

parent e84e13e8
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......@@ -508,6 +508,7 @@ process softwareReport {
script:
"""
echo $workflow.nextflow.version > version_nextflow.txt
python3 $baseDir/scripts/generate_versions.py -f *.txt -o software_versions
python3 $baseDir/scripts/generate_references.py -r $references -o software_references
"""
......
......@@ -23,6 +23,7 @@ logger.propagate = False
logger.setLevel(logging.INFO)
SOFTWARE_REGEX = {
'Nextflow': ['version_nextflow.txt', r"(\S+)"],
'Trim Galore!': ['version_trimgalore.txt', r"version (\S+)"],
'Cutadapt': ['version_cutadapt.txt', r"Version (\S+)"],
'BWA': ['version_bwa.txt', r"Version: (\S+)"],
......@@ -88,6 +89,7 @@ def main():
out_filename = output + '_mqc.yaml'
results = OrderedDict()
results['Nextflow'] = '<span style="color:#999999;\">N/A</span>'
results['Trim Galore!'] = '<span style="color:#999999;\">N/A</span>'
results['Cutadapt'] = '<span style="color:#999999;\">N/A</span>'
results['BWA'] = '<span style="color:#999999;\">N/A</span>'
......
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