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Commit 360482da authored by Venkat Malladi's avatar Venkat Malladi
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Fix when things are run.

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...@@ -30,6 +30,8 @@ paired_end_human: ...@@ -30,6 +30,8 @@ paired_end_human:
stage: single stage: single
only: only:
- branches - branches
except:
- master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_ENCSR729LGA_PE.txt" --genome 'GRCh38' --pairedEnd true -resume
- pytest -m pairedend - pytest -m pairedend
...@@ -40,6 +42,8 @@ single_end_diff: ...@@ -40,6 +42,8 @@ single_end_diff:
stage: multiple stage: multiple
only: only:
- branches - branches
except:
- master
script: script:
- nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume - nextflow run workflow/main.nf --designFile "$CI_PROJECT_DIR/test_data/design_diff_SE.txt" --genome 'GRCm38' -resume
- pytest -m singlediff - pytest -m singlediff
......
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