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Commit 3065da66 authored by Venkat Malladi's avatar Venkat Malladi
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Fix test file error and missing modules.

parent d7b59b36
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......@@ -326,6 +326,8 @@ process crossReads {
}
else {
"""
module load python/3.6.1-2-anaconda
module load phantompeakqualtools/1.2
python3 $baseDir/scripts/xcor.py -t $seTagAlign
"""
}
......
......@@ -11,4 +11,13 @@ test_output_path = os.path.dirname(os.path.abspath(__file__)) + \
@pytest.mark.singleend
def test_software_references():
assert os.path.exists(os.path.join(test_output_path, 'software_references_mqc.txt'))
assert os.path.exists(os.path.join(test_output_path, 'software_references_mqc.yaml'))
@pytest.mark.singleend
def test_software_references_output():
software_references = os.path.join(test_output_path, 'software_references_mqc.yaml')
with open(software_references, 'r') as stream:
data_loaded = yaml.load(stream)
assert len(data_loaded['data'].split('<dt>')) == 17
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