CHANGELOG.md

Changelog

All notable changes to this project will be documented in this file.

[Unreleased]

Updated

• Updated astrocyte to 0.3.1

[publish_1.1.2 ] - 2020-06-22

• Add pipeline tracking

[publish_1.1.1 ] - 2020-04-23

Added

• Add Nextflow to references.md
• Add test data for test_pool_and_pseudoreplicate
• Add PlotProfile Option
• Add Python version to MultiQC
• Add and Update tests
• Use GTF files instead of TxDb and org libraries in Annotate Peaks
• Make gtf and geneName files as param inputs
• Add test data for single control and single replicate

Fixed

• Fix references.md link in citation of README.md
• Fix pool_and_psuedoreplicate.py to run single experiment
• Fix xcor to increase file size for --random-source
• Fix skip diff test for paired-end data
• Fix xcor to get lowest non zero value above 50
• Fix references to display in Multiqc report
• Update astrocyte testing to 0.2.0

[publish_1.0.6 ] - 2019-05-31

Added

• MIT LICENSE
• Check for correct genome input
• Check for correct output for motif serach

Fixed

• Path to reference fasta file

[publish_1.0.5 ] - 2019-05-16

Fixed

• Retitled documentation for skipDiff and skipMotif to be more clear
• Add missing python module for motif search
• Updated links for phantompeaktools and references
• Fix callPeaks for single control experiments

[publish_1.0.3 ] - 2019-04-23

Fixed

• Variable name for design file for Astrocyte
• File path for design file to work for Astrocyte

[publish_1.0.0 ] - 2019-04-23

Initial release of pipeline