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Holly Ruess authoredb39fcb4c
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BICF / Astrocyte / chipseq_analysis
113 commits behind the upstream repository.
CHIPseq.sh 334 B
#!/bin/bash
#SBATCH --job-name=CHIPseq
#SBATCH --partition=super
#SBATCH --output=CHIPseq.%j.out
#SBATCH --error=CHIPseq.%j.err
module load nextflow/0.31.0
module add python/3.6.1-2-anaconda
nextflow run workflow/main.nf \
--reads '/path/to/*fastq.gz' \
--designFile '/path/to/design.txt' \
--genome 'GRCm38' \
--pairedEnd 'true'