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- .Rprofile 2 additions, 0 deletions.Rprofile
- .gitignore 23 additions, 0 deletions.gitignore
- renv.lock 0 additions, 0 deletionsrenv.lock
- renv/activate.R 0 additions, 0 deletionsrenv/activate.R
- sample_sheets/contamination_fraction.tsv 9 additions, 0 deletionssample_sheets/contamination_fraction.tsv
- sample_sheets/sample_sheet.csv 9 additions, 0 deletionssample_sheets/sample_sheet.csv
- sample_sheets/slurm_array_config_cellbender.tsv 11 additions, 0 deletionssample_sheets/slurm_array_config_cellbender.tsv
- sample_sheets/slurm_array_config_cr612.tsv 6 additions, 0 deletionssample_sheets/slurm_array_config_cr612.tsv
- scRNA_urethra.Rproj 13 additions, 0 deletionsscRNA_urethra.Rproj
- scripts/01_preprocess.R 126 additions, 0 deletionsscripts/01_preprocess.R
- scripts/02_initial_analysis.R 333 additions, 0 deletionsscripts/02_initial_analysis.R
- scripts/calc_rho_from_cellbender.py 0 additions, 0 deletionsscripts/calc_rho_from_cellbender.py
- scripts/calc_rho_from_cellbender.slurm 0 additions, 0 deletionsscripts/calc_rho_from_cellbender.slurm
- scripts/environment_cellbender.yml 0 additions, 0 deletionsscripts/environment_cellbender.yml
- scripts/run_cellbender.slurm 0 additions, 0 deletionsscripts/run_cellbender.slurm
- scripts/run_cellranger_count.slurm 0 additions, 0 deletionsscripts/run_cellranger_count.slurm
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