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Created with Raphaël 2.2.016Nov1512106543226Oct18171615985432128Sep25244231Aug21201916158615Jul141312109826Jun252422201918171615141312111095131May2322201916141310973130Apr29272520191612119654330Mar292827262319181714128528Feb272423211615131210Update README.mdUpdate README.mdUpdata PdPbPc code... res etcMerge remote-tracking branch 'origin/develop' into PdPbPcMerge remote-tracking branch 'origin/develop' into PrFxRevert all analysis to use dws bulk pan Epi and St genelists for lin ID with QuSAGEDecrease stringency for pan Epi/St generation in Pd and increase min pop downsample for FACSUpdate dws.sc pan Epi and St DEGsFilter pop specific genes from pan Epi and St DEGsDon't downsample FACS analysisRevert Epi and St dws.sc genesets and how they are generatedUpdate dws.sc genesMerge branch 'StressCompare' into 'develop'Fix output folders for StressCompare and add to Pd.shMerge devleop into StressCompareIncrease stringency for pan Epi and St DEG calc to 75% of pops and 2FCUpdate README.mdUpdate readme.mdMake DEG tryFix DEG on DS.D17Don't do cell cycle analysis for DS.D17Revert to high RAM nodes and new R/3.4.1Revert to stable old R/3.4.1Allow DS bash scripts to use any nodeUse rebuilt R/3.4.1Update bash scripts, link data and use new R/3.4.1Fix LE DEG generation for Pd analysisFix LE comparison for DEG for DS.D17Add DEG generation to ds.D17Fix Pd patient subsettingFinalize (?) all code for PdPbPc to runAllow LinkData to create sub dirAdd leu geneset, add 3grp cust col tSNE and finalize PdPbPc leu ID codeAdd code for VAMC015PrFx analysisChange post stress res to 1 and fix Pb subsetChange post stress res to 1 and fix Pd subsetChange post stress res to 1Fix CustCol to handle Unknown better and fix PdPbPc.Pb codeFix CustCol to handle Unknown better and fix PdPbPc.Pd codeFix CustCol to handle Unknown better and fix PdPbPc.Pc code