Skip to content
Snippets Groups Projects
Select Git revision
  • PdPbPc
  • PrFx
  • develop
  • ds.aggr
  • master default
  • test.CNV_branch
  • test.SingleGeneAnalysis_branch
  • 2.0.0
  • 1.1.0
  • 1.0.0
  • 0.1.0
You can move around the graph by using the arrow keys.
Created with Raphaël 2.2.014Aug13Feb18Dec17141074225Nov1918161512106543226Oct18171615985432128Sep25244231Aug21201916158615Jul141312109826Jun252422201918171615141312111095131May2322201916141310973130Apr29272520191612119654330Mar292827262319181714128528Feb272423211615131210Add LICENSEmastermasterUpdate README.mdMerge branch 'develop' into 'master'2.0.02.0.0Fix run_Pd for Hillock genesetdevelopdevelopFix hillock genelist csv and edit the Pd r.script to matchSubcluster Epi and FMStPdPbPcPdPbPcGet PdPbPc Lymphoid/Myeloid analyis stable... need to get better genelistsModify QuSAGE function to not create cor plots and to handle multiple sets with the same nameRevert R version to fixed stable version: 3.4.1-gccmklCopy VAMC15x analysis to VAMC13xPrFxPrFxQuSAGE ALL populations at one time for VAMC15xUpdateUpdate dws sc genesets... againUse all cells for lung liniage QuSAGEUpdate dws sc degUpdate README.mdUpdate README.mdUpdata PdPbPc code... res etcMerge remote-tracking branch 'origin/develop' into PdPbPcMerge remote-tracking branch 'origin/develop' into PrFxRevert all analysis to use dws bulk pan Epi and St genelists for lin ID with QuSAGEDecrease stringency for pan Epi/St generation in Pd and increase min pop downsample for FACSUpdate dws.sc pan Epi and St DEGsFilter pop specific genes from pan Epi and St DEGsDon't downsample FACS analysisRevert Epi and St dws.sc genesets and how they are generatedUpdate dws.sc genesMerge branch 'StressCompare' into 'develop'Fix output folders for StressCompare and add to Pd.shMerge devleop into StressCompareIncrease stringency for pan Epi and St DEG calc to 75% of pops and 2FCUpdate README.mdUpdate readme.mdMake DEG tryFix DEG on DS.D17Don't do cell cycle analysis for DS.D17Revert to high RAM nodes and new R/3.4.1Revert to stable old R/3.4.1Allow DS bash scripts to use any nodeUse rebuilt R/3.4.1