Update analysis, cutoff for nGenes increase due to deeper seq, don't recluster subcluster, change genesets to not use readxl

Filter DEGs to only be a adj-p-value <=0.05, and loosen DEG criteria for NEs to genes present in 1% of cells and min of 1FC

Fix DPrF analysis to use correct CCA code and make separate r.scripts for 2 and 3 patient aggregation