Add test code for QuSAGE on sub-clustering *still needs to be cleaned up before merging*

bash.scripts/sc_QuSAGE.SubClust.sh

+#!/bin/bash
+#
+# CREATED USING THE BIOHPC PORTAL on Thu Nov 30 2017 16:16:26 GMT-0600 (Central Standard Time)
+#
+# This file is batch script used to run commands on the BioHPC cluster.
+# The script is submitted to the cluster using the SLURM `sbatch` command.
+# Lines starting with # are comments, and will not be run.
+# Lines starting with #SBATCH specify options for the scheduler.
+# Lines that do not start with # or #SBATCH are commands that will run.
+
+# Name for the job that will be visible in the job queue and accounting tools.
+#SBATCH --job-name R_QuSAGE.SubClust
+
+# Name of the SLURM partition that this job should run on.
+#SBATCH -p 256GB       # partition (queue)
+# Number of nodes required to run this job
+#SBATCH -N 1
+
+# Time limit for the job in the format Days-H:M:S
+# A job that reaches its time limit will be cancelled.
+# Specify an accurate time limit for efficient scheduling so your job runs promptly.
+#SBATCH -t 7-0:0:0
+
+# The standard output and errors from commands will be written to these files.
+# %j in the filename will be replace with the job number when it is submitted.
+#SBATCH -o job_%j.out
+#SBATCH -e job_%j.err
+
+# Send an email when the job status changes, to the specfied address.
+#SBATCH --mail-type ALL
+#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
+
+module load R/3.3.2-gccmkl
+
+# COMMAND GROUP 1
+Rscript ../r.scripts/sc_QuSAGE.LineageSubClust.R
+# END OF SCRIPT