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Commit ddaba369 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix stress genes to dws for D27

parent 2f30f839
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...@@ -91,7 +91,7 @@ option_list=list( ...@@ -91,7 +91,7 @@ option_list=list(
make_option("--hpc",action="store",default=0.7,type='numeric',help="Max variance cutoff for PCs to use, pre-stress"), make_option("--hpc",action="store",default=0.7,type='numeric',help="Max variance cutoff for PCs to use, pre-stress"),
make_option("--res.prestress",action="store",default=1,type='numeric',help="Resolution to cluster, pre-stress"), make_option("--res.prestress",action="store",default=1,type='numeric',help="Resolution to cluster, pre-stress"),
make_option("--st",action="store",default="TRUE",type='logical',help="Remove stressed cells?"), make_option("--st",action="store",default="TRUE",type='logical',help="Remove stressed cells?"),
make_option("--stg",action="store",default="go",type='character',help="Geneset to use for stress ID"), make_option("--stg",action="store",default="dws",type='character',help="Geneset to use for stress ID"),
make_option("--hpc.poststress",action="store",default=0.7,type='numeric',help="Max variance cutoff for PCs to use, post-stress"), make_option("--hpc.poststress",action="store",default=0.7,type='numeric',help="Max variance cutoff for PCs to use, post-stress"),
make_option("--res.poststress",action="store",default=0.5,type='numeric',help="Resolution to cluster, post-stress"), make_option("--res.poststress",action="store",default=0.5,type='numeric',help="Resolution to cluster, post-stress"),
make_option("--ds",action="store",default=0,type='integer',help="Number of cells to downsample"), make_option("--ds",action="store",default=0,type='integer',help="Number of cells to downsample"),
......
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