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Commit ae0cf3b1 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Changer Stress DEG to be 5FC in script and replace geneset

parent b3a6e22a
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......@@ -23,64 +23,3 @@
"BTG2",0,1.79292142986901,0.729,0.264,0
"ID3",0,1.73454884935116,0.655,0.178,0
"IER3",0,1.70446682628117,0.889,0.631,0
"CXCL3",0,1.60931625997287,0.664,0.176,0
"DNAJB1",0,1.59850593849721,0.689,0.228,0
"GADD45A",0,1.50818550728368,0.763,0.496,0
"CYR61",0,1.49589683589893,0.71,0.249,0
"IRF1",0,1.48338243138847,0.756,0.297,0
"ID2",0,1.41822106511496,0.572,0.16,0
"CCNL1",0,1.39908694993794,0.892,0.6,0
"PMAIP1",0,1.35557703765725,0.719,0.405,0
"DDIT4",0,1.31282300950925,0.647,0.194,0
"SRSF3",0,1.30710773036917,0.817,0.492,0
"CLK1",0,1.30667127127886,0.759,0.306,0
"SERTAD1",0,1.30091467469935,0.636,0.186,0
"CXCL2",0,1.27753425216915,0.745,0.234,0
"HSPB1",0,1.26748088207943,0.927,0.611,0
"UBC",0,1.24789766436135,0.991,0.929,0
"MCL1",0,1.24619653513429,0.715,0.375,0
"HEXIM1",0,1.23743385692162,0.506,0.086,0
"BHLHE40",0,1.21438550646165,0.556,0.116,0
"EIF5",0,1.19699909239659,0.778,0.48,0
"PPP1R10",0,1.19026970306526,0.538,0.109,0
"TNFAIP3",0,1.18808064208494,0.651,0.267,0
"CSRNP1",0,1.12723559708931,0.554,0.106,0
"ERRFI1",0,1.12162220420524,0.616,0.224,0
"KLF4",0,1.11684696907775,0.664,0.305,0
"ADM",0,1.0870845220821,0.673,0.305,0
"BRD2",0,1.08060526789049,0.688,0.352,0
"YME1L1",0,1.05315258988933,0.568,0.211,0
"ZFP36L2",0,1.04796040141737,0.822,0.412,0
"IER5",0,1.04127905003185,0.598,0.227,0
"HBEGF",0,1.02458949014138,0.507,0.19,0
"BTG1",0,1.02068573178792,0.915,0.764,0
"NFKBIZ",0,1.01159139946131,0.628,0.238,0
"TSC22D1",0,1.01038464965711,0.79,0.498,0
"ETS2",0,1.00134290105154,0.62,0.334,0
"PNRC1",0,0.987993147099094,0.922,0.7,0
"UBB",0,0.985112423805752,0.89,0.7,0
"SFPQ",0,0.975523418209832,0.68,0.327,0
"EFNA1",0,0.942463139483255,0.562,0.273,0
"ZC3H12A",0,0.921403716518241,0.586,0.22,0
"JUND",0,0.885458332668161,0.556,0.228,0
"REL",0,0.87943953897329,0.612,0.275,0
"RSRC2",0,0.834905897751494,0.757,0.518,0
"IFRD1",0,0.808665066921434,0.61,0.307,0
"H1FX",0,0.800634462532864,0.599,0.27,0
"H3F3B",0,0.732214103427103,0.986,0.942,0
"PHLDA1",1.02133599968443e-295,0.959639062745214,0.507,0.211,2.32547993768147e-291
"ZFP36L1",7.01182872962643e-284,0.749039394729839,0.828,0.585,1.59652328344864e-279
"RND3",3.59122464643588e-277,0.941576586855685,0.592,0.305,8.17685939746986e-273
"SOX4",2.27107411030192e-264,1.17277691593951,0.557,0.282,5.17100864174644e-260
"RSRP1",5.79464475750986e-238,0.724187674607765,0.603,0.345,1.31938266483742e-233
"ELF3",1.23308369224611e-229,1.1739934540004,0.736,0.551,2.80760825887517e-225
"MAFF",4.22840662425709e-222,0.784549534026438,0.662,0.446,9.62765904277098e-218
"FHL2",5.10684462018066e-220,0.865491990857391,0.528,0.283,1.16277745156893e-215
"BAZ1A",6.45488015270952e-214,0.846045402132086,0.656,0.476,1.46971166197043e-209
"DDX5",4.29824812803795e-210,0.720783720429486,0.839,0.749,9.78668116272961e-206
"CEBPD",8.74901313609687e-189,0.730646578981763,0.895,0.814,1.9920628009579e-184
"KMT2E",2.32742827841562e-183,0.700781951180599,0.571,0.352,5.29932144712452e-179
"HSPA1A",2.7670302822449e-177,1.27704382779966,0.616,0.388,6.30025124964341e-173
"EIF4A3",1.41466656550896e-173,0.715170646976432,0.503,0.282,3.22105430300735e-169
"PHLDA2",3.10707001127591e-172,0.956383635114289,0.784,0.657,7.07448770867413e-168
"CLDN4",4.42454248232599e-107,0.869175071834188,0.71,0.569,1.0074240778008e-102
......@@ -277,7 +277,7 @@ scTables(sc10x,i.1="samples",i.2="Merge_Epi.dws_St.go")
scTables(sc10x,i.1="samples",i.2="Merge_Epi.dws_St.go_NE")
scTables(sc10x,i.1="Merge_Epi.dws_St.go_NE",i.2="Merge_Epi.dws_St.go")
genes.deg.Stress <- scDEG(sc10x.Stress,i="Stress",g.1="Stress",g.2="ALL",pct=0.5,t=2)
genes.deg.Stress <- scDEG(sc10x.Stress,i="Stress",g.1="Stress",g.2="ALL",pct=0.5,t=5)
genes.deg.Epi <- scDEG(sc10x,i="Lin",g.1="Epi",g.2="St",t=2)
genes.deg.St <- scDEG(sc10x,i="Lin",g.1="St",g.2="Epi",t=2)
......@@ -348,7 +348,7 @@ for (i in ls(pattern="^genes.deg")){
}
save(list=ls(pattern="^genes.deg"),file="./analysis/DEG.Rda")
rm(ls(pattern="^genes.deg"))
rm(list=ls(pattern="^genes.deg"))
save(list=ls(pattern="^sc10x"),file="./analysis/sc10x.Rda")
rm(ls(pattern="^sc10x"))
rm(list=ls(pattern="^sc10x"))
save.image(file="./analysis/Data.RData")
\ No newline at end of file
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