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Commit 81564f59 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Update DEGs from stable D17 analysis

parent 737034f2
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with 1337 additions and 1350 deletions
genesets/genes.deg.BE.csv
+ 47
− 49
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"CCL2",0,2.1672250478762,0.281,0.067,0
"TAGLN",0,1.79411360964793,0.576,0.119,0
"KRT14",0,1.64708223882061,0.337,0.043,0
"CAV1",0,1.58539270100057,0.735,0.165,0
"KRT23",0,1.50714229422528,0.748,0.377,0
"RGCC",0,1.50285560715747,0.551,0.287,0
"KRT15",0,1.37502415495675,0.734,0.321,0
"KRT5",0,1.37252176178826,0.752,0.207,0
"DKK1",0,1.36229274987983,0.495,0.2,0
"TFPI2",0,1.20778976783914,0.273,0.086,0
"LAYN",0,1.19668639430896,0.489,0.092,0
"CLDN1",0,1.13041047436592,0.609,0.21,0
"CALD1",0,1.06224025990838,0.638,0.234,0
"EMP3",0,1.03729749220998,0.59,0.189,0
"ENO1",0,1.03479037712791,0.871,0.477,0
"KRT17",0,1.01432613291801,0.974,0.59,0
"CAV2",0,1.01068120755349,0.734,0.296,0
"PDCD5",0,0.986425969080536,0.689,0.259,0
"KRT7",0,0.957700570886466,0.9,0.641,0
"TPM2",0,0.952797340921023,0.353,0.048,0
"MYC",0,0.942109860767978,0.542,0.208,0
"NCL",0,0.937816896814557,0.865,0.519,0
"PTRF",0,0.928972897131814,0.68,0.244,0
"MYL9",0,0.908686870019568,0.472,0.113,0
"NPM1",0,0.900514463464132,0.95,0.707,0
"ATP1B3",0,0.853572634923212,0.735,0.396,0
"RAN",0,0.852157282631793,0.945,0.685,0
"EEF1B2",0,0.84075603599352,0.973,0.764,0
"S100A2",0,0.838916535047056,0.946,0.549,0
"PRMT1",0,0.816955027733138,0.674,0.299,0
"TUBB4B",0,0.812226966144889,0.748,0.408,0
"PA2G4",0,0.799348719730207,0.722,0.368,0
"DST",0,0.79067339084803,0.455,0.207,0
"TUBA1B",0,0.783184221168487,0.747,0.422,0
"TUBA1C",0,0.76724961873042,0.636,0.317,0
"SERPINF1",0,0.761242423595405,0.416,0.109,0
"AXL",0,0.756837168956021,0.355,0.073,0
"RANBP1",0,0.752938705602308,0.639,0.308,0
"MYL12A",0,0.74086903191263,0.902,0.686,0
"SRSF3",0,0.739467883259873,0.639,0.334,0
"SNRPD1",0,0.726669899728489,0.684,0.37,0
"SRM",0,0.724226140788011,0.536,0.22,0
"PLAU",0,0.701460228547683,0.715,0.43,0
"SSB",0,0.700736790245669,0.568,0.255,0
"ANXA3",0,0.696728559766858,0.48,0.227,0
"TXNRD1",0,0.696477659896705,0.736,0.497,0
"DEFB1",2.54067834542423e-283,1.02788096767456,0.369,0.204,5.78487052469642e-279
"CYR61",3.50252180775443e-238,1.08953517967553,0.315,0.161,7.97489190407606e-234
"CXCL1",1.86663910661543e-132,0.773210326848814,0.514,0.418,4.25015058185267e-128
"CCL2",0,2.27507559361722,0.295,0.068,0
"TAGLN",0,1.81277819748391,0.584,0.126,0
"KRT14",0,1.64401178883971,0.348,0.047,0
"CAV1",0,1.597690672242,0.749,0.178,0
"RGCC",0,1.51426624913544,0.557,0.288,0
"KRT23",0,1.4548175027086,0.746,0.394,0
"KRT15",0,1.37853206587106,0.743,0.338,0
"DKK1",0,1.36775811503005,0.494,0.209,0
"KRT5",0,1.3295208266553,0.762,0.225,0
"TFPI2",0,1.26018546257489,0.283,0.086,0
"LAYN",0,1.18906870162629,0.49,0.102,0
"CYR61",0,1.18264153783683,0.335,0.159,0
"CALD1",0,1.11128349788073,0.656,0.233,0
"CLDN1",0,1.10590635570793,0.609,0.225,0
"EMP3",0,1.02035585830508,0.588,0.198,0
"ENO1",0,1.01434596604744,0.867,0.49,0
"KRT17",0,1.00749907138996,0.976,0.608,0
"CAV2",0,0.988879136194515,0.734,0.312,0
"MYC",0,0.968388944194976,0.551,0.218,0
"PDCD5",0,0.966435905769999,0.683,0.272,0
"TPM2",0,0.962242938649517,0.36,0.051,0
"PTRF",0,0.953547340864556,0.69,0.25,0
"NCL",0,0.929477698807808,0.863,0.531,0
"MYL9",0,0.925863408770105,0.48,0.117,0
"KRT7",0,0.887898371066281,0.888,0.659,0
"NPM1",0,0.883023614204755,0.95,0.717,0
"DST",0,0.863552484155756,0.472,0.211,0
"ATP1B3",0,0.836507200496906,0.729,0.407,0
"RAN",0,0.835669211305929,0.941,0.694,0
"TUBB4B",0,0.811597528930079,0.746,0.416,0
"EEF1B2",0,0.809781703103819,0.975,0.773,0
"PRMT1",0,0.804074900050573,0.669,0.312,0
"SERPINF1",0,0.79301876050555,0.429,0.113,0
"TUBA1B",0,0.777657485236674,0.745,0.43,0
"PA2G4",0,0.771960869335852,0.712,0.383,0
"TUBA1C",0,0.770817460700272,0.633,0.326,0
"AXL",0,0.770246577977663,0.36,0.077,0
"S100A2",0,0.767623310578663,0.944,0.568,0
"MYL12A",0,0.73937343341496,0.9,0.693,0
"RANBP1",0,0.732366823504836,0.635,0.32,0
"SRSF3",0,0.716620323097681,0.639,0.347,0
"SRM",0,0.701632595920317,0.527,0.232,0
"PLAU",0,0.700869414919523,0.714,0.444,0
"SNRPD1",0,0.699928055515684,0.678,0.383,0
"TXNRD1",0,0.697632035875745,0.726,0.504,0
"DEFB1",4.49029333545871e-272,1.00290404028632,0.371,0.214,1.02239488955059e-267
"CXCL1",1.37404189426666e-139,0.812205093472333,0.518,0.424,3.12855598905576e-135
genesets/genes.deg.Endo.csv
+ 101
− 102
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"MMP1",0,2.85211338993148,0.575,0.128,0
"IFI27",0,2.67261986193341,0.93,0.058,0
"HMOX1",0,2.39814156971164,0.91,0.253,0
"SELE",0,2.3093838687928,0.599,0.028,0
"HLA-DRB1",0,2.13264568012433,0.882,0.063,0
"ACKR1",0,2.00315546735436,0.568,0.023,0
"CLDN5",0,1.85785684258363,0.601,0.026,0
"CD200",0,1.83667632651878,0.768,0.042,0
"CD74",0,1.81945097133143,0.859,0.126,0
"CD93",0,1.64269530556722,0.667,0.029,0
"NDRG1",0,1.59966971901025,0.823,0.263,0
"PCAT19",0,1.52226095226959,0.688,0.028,0
"SH3BGRL3",0,1.5006166800404,0.88,0.376,0
"SPRY1",0,1.49762198515801,0.533,0.097,0
"HLA-DRA",0,1.49092975345235,0.74,0.046,0
"RAI14",0,1.44641004842917,0.672,0.059,0
"TMSB10",0,1.39106731112438,0.987,0.792,0
"LCN6",0,1.36012834257253,0.514,0.021,0
"WWTR1",0,1.33747547161277,0.749,0.191,0
"HLA-DRB5",0,1.33285635341896,0.618,0.031,0
"CALCRL",0,1.32121836081166,0.571,0.022,0
"TCF4",0,1.302582959433,0.744,0.205,0
"CFLAR",0,1.29331099252775,0.844,0.381,0
"ZNF385D",0,1.27310679706596,0.568,0.046,0
"TPM3",0,1.22871256919975,0.735,0.18,0
"VWF",0,1.21435959122231,0.501,0.016,0
"PLVAP",0,1.20771102953308,0.47,0.018,0
"TM4SF1",0,1.20001662514459,0.984,0.585,0
"ASPH",0,1.19628988147116,0.624,0.127,0
"ECSCR.1",0,1.19451420790024,0.523,0.017,0
"HLA-DQB1",0,1.19047344157075,0.488,0.023,0
"ADGRL4",0,1.17272781936171,0.527,0.015,0
"S100A10",0,1.12794748200134,0.839,0.439,0
"CSTB",0,1.11028589111464,0.756,0.405,0
"NQO1",0,1.09191934974788,0.451,0.075,0
"SLC7A11",0,1.06979185090318,0.499,0.079,0
"SOX17",0,1.04340633715441,0.307,0.008,0
"MSN",0,1.03254666349689,0.768,0.306,0
"HLA-DPA1",0,1.02442465034052,0.526,0.052,0
"NOP10",0,1.00465713258519,0.741,0.314,0
"RHOC",0,0.983265666337058,0.829,0.426,0
"SWAP70",0,0.977832940557532,0.472,0.069,0
"RDX",0,0.976044925483127,0.655,0.257,0
"DUSP6",0,0.975229649135015,0.359,0.035,0
"ARPC1B",0,0.972613320931989,0.657,0.226,0
"FXYD5",0,0.947799994420353,0.613,0.165,0
"BACE2",0,0.944017717112569,0.51,0.097,0
"CNKSR3",0,0.94158033218051,0.382,0.026,0
"TM4SF18",0,0.939862386262852,0.313,0.011,0
"CLIC1",0,0.937799457849097,0.863,0.536,0
"TXNRD1",0,0.933571107902058,0.793,0.461,0
"TXN",0,0.929035998430671,0.98,0.857,0
"ADAMTS9",0,0.928167479296147,0.823,0.383,0
"HLA-DQA1",0,0.926725542541797,0.307,0.016,0
"PNP",0,0.924759992696021,0.699,0.26,0
"MGST2",0,0.885840492955843,0.36,0.043,0
"MRPL33",0,0.878260470033519,0.564,0.178,0
"MED24",0,0.876392396368078,0.255,0.016,0
"LMO2",0,0.864021940722541,0.346,0.014,0
"FTL",0,0.861105783130748,0.999,0.997,0
"SQSTM1",0,0.857536428723402,0.948,0.836,0
"PPFIBP1",0,0.849029478298796,0.465,0.11,0
"RNASE1",0,0.83956679047957,0.317,0.012,0
"NPDC1",0,0.828155556641598,0.467,0.111,0
"CDC37",0,0.801026995290027,0.62,0.229,0
"ZEB1",0,0.795510190926092,0.504,0.142,0
"COL15A1",0,0.791872691600001,0.403,0.084,0
"CDC42EP3",0,0.783683377270258,0.521,0.132,0
"EMCN",0,0.779822713944954,0.294,0.011,0
"ST3GAL6",0,0.775670614704679,0.319,0.014,0
"NEURL1B",0,0.775351171332234,0.341,0.043,0
"ITM2A",0,0.771952500831478,0.455,0.113,0
"RAPGEF5",0,0.771698376322581,0.316,0.014,0
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"RPS18",0,0.72230757972845,0.998,0.986,0
"HLA-DPB1",0,0.713708395026563,0.492,0.129,0
"CD59",0,0.695902263880308,0.962,0.814,0
"HLA-B",0,0.69354766422567,0.984,0.875,0
"CARHSP1",1.87418696514788e-295,0.701948776626549,0.372,0.081,4.2673363009452e-291
"UPP1",3.81626575830615e-294,0.854953395898785,0.395,0.095,8.68925550508726e-290
"LUZP1",8.55311715350037e-291,0.7512275194873,0.57,0.223,1.9474592446805e-286
"ARPC5L",2.68009922328146e-287,0.717301613513762,0.497,0.169,6.10231792148955e-283
"RAB13",1.14685869319593e-286,0.720288016670188,0.707,0.375,2.61128255853782e-282
"KLF2",2.99392351850859e-286,0.826029191120029,0.386,0.091,6.8168644592922e-282
"GCLM",2.38487063144426e-271,0.69965176933183,0.638,0.292,5.43011194073544e-267
"PGF",5.09421382740087e-267,0.889844629581222,0.272,0.039,1.1599015463609e-262
"ITGA2",4.37374030615584e-254,0.702812774685805,0.371,0.096,9.95856930308622e-250
"SH3BP5",4.5122013420104e-253,0.706542630992061,0.443,0.144,1.02738312356235e-248
"TNPO1",5.25581273461195e-247,0.706645034221696,0.495,0.191,1.1966960015438e-242
"TSC22D1",1.01750507856972e-246,0.821807494252361,0.796,0.484,2.31675731339539e-242
"SERPINB1",1.06700445137298e-234,0.731691608663608,0.352,0.092,2.42946243533115e-230
"PLAU",2.64522054238179e-212,0.773722285999901,0.353,0.1,6.02290265294911e-208
"CSF3",3.67214811549116e-198,0.93423993971318,0.639,0.348,8.36111404416182e-194
"ISG20",2.64612965909796e-197,0.693830240460937,0.722,0.46,6.02497262080015e-193
"CXCL2",2.5393159831877e-162,1.06804374193167,0.651,0.403,5.78176856212007e-158
"MMP10",2.72870324546332e-135,0.896583689569825,0.26,0.08,6.21298441959542e-131
"ANGPT2",2.02831226159328e-104,1.02222877722814,0.269,0.108,4.61826418842174e-100
"SOCS3",6.09782846147529e-26,0.924610998468391,0.346,0.25,1.38841456239331e-21
"MMP1",0,2.99015825368329,0.569,0.118,0
"IFI27",0,2.84606820067575,0.928,0.035,0
"HMOX1",0,2.53170930803293,0.91,0.234,0
"SELE",0,2.37778377455589,0.595,0.014,0
"HLA-DRB1",0,2.20406184553226,0.878,0.042,0
"ACKR1",0,2.0447940341158,0.563,0.011,0
"CLDN5",0,1.8927218765674,0.598,0.011,0
"CD200",0,1.88536715553879,0.764,0.024,0
"CD74",0,1.87398598848981,0.859,0.105,0
"CD93",0,1.69226322347524,0.67,0.01,0
"NDRG1",0,1.62456547569302,0.821,0.249,0
"SH3BGRL3",0,1.57074442349385,0.883,0.361,0
"SPRY1",0,1.54231957810993,0.538,0.082,0
"PCAT19",0,1.53970402473674,0.685,0.011,0
"HLA-DRA",0,1.49762337856131,0.734,0.031,0
"RAI14",0,1.47321493087441,0.669,0.044,0
"TMSB10",0,1.41176683517407,0.987,0.786,0
"LCN6",0,1.3824939568591,0.513,0.008,0
"WWTR1",0,1.35751903072126,0.75,0.174,0
"HLA-DRB5",0,1.3423890094344,0.615,0.017,0
"CALCRL",0,1.34219826855125,0.569,0.007,0
"TCF4",0,1.336212942499,0.748,0.188,0
"CFLAR",0,1.30241915062705,0.846,0.368,0
"ZNF385D",0,1.28944619749858,0.565,0.033,0
"TPM3",0,1.24202938577001,0.735,0.164,0
"PLVAP",0,1.22658210115841,0.47,0.006,0
"VWF",0,1.22250135447346,0.496,0.004,0
"ECSCR.1",0,1.20852797189235,0.518,0.005,0
"ASPH",0,1.20661291293328,0.625,0.113,0
"TM4SF1",0,1.20622390754132,0.986,0.572,0
"HLA-DQB1",0,1.2050362426025,0.484,0.012,0
"ADGRL4",0,1.17392099828974,0.522,0.004,0
"S100A10",0,1.15850857528276,0.843,0.428,0
"CSTB",0,1.1196908091523,0.758,0.393,0
"NQO1",0,1.10344823757,0.448,0.065,0
"SLC7A11",0,1.09605415838441,0.501,0.066,0
"MSN",0,1.03529372936428,0.769,0.292,0
"SOX17",0,1.03006619504848,0.301,0.003,0
"HLA-DPA1",0,1.0245712547772,0.524,0.04,0
"NOP10",0,1.00387635643456,0.741,0.301,0
"RHOC",0,0.98834687829729,0.831,0.414,0
"SWAP70",0,0.985887587060761,0.471,0.058,0
"ARPC1B",0,0.978088487483285,0.658,0.213,0
"RDX",0,0.968537767929061,0.658,0.246,0
"DUSP6",0,0.967581548210425,0.358,0.026,0
"BACE2",0,0.965655595016754,0.516,0.083,0
"FXYD5",0,0.957636507282892,0.614,0.152,0
"CNKSR3",0,0.95430770291236,0.383,0.014,0
"CLIC1",0,0.947671676683058,0.866,0.524,0
"TM4SF18",0,0.945671824559572,0.313,0.003,0
"TXNRD1",0,0.938099497791917,0.797,0.452,0
"PNP",0,0.937818731642237,0.704,0.244,0
"ADAMTS9",0,0.935212921943339,0.827,0.369,0
"TXN",0,0.92871052791171,0.981,0.852,0
"HLA-DQA1",0,0.910747299362069,0.302,0.009,0
"MGST2",0,0.890228384735023,0.357,0.035,0
"MRPL33",0,0.879017478561198,0.567,0.166,0
"MED24",0,0.868582072311068,0.252,0.011,0
"LMO2",0,0.86776494675003,0.342,0.006,0
"FTL",0,0.867646607358132,0.999,0.997,0
"SQSTM1",0,0.865616273357238,0.95,0.831,0
"UPP1",0,0.858216377029575,0.397,0.085,0
"PPFIBP1",0,0.851669709495155,0.467,0.099,0
"RNASE1",0,0.837524923499778,0.317,0.005,0
"NPDC1",0,0.830408958366812,0.467,0.102,0
"ZEB1",0,0.79767713699221,0.505,0.13,0
"CDC37",0,0.794188654782501,0.62,0.219,0
"COL15A1",0,0.793074365091976,0.403,0.075,0
"EMCN",0,0.781949499408713,0.294,0.004,0
"NEURL1B",0,0.778759829946133,0.342,0.034,0
"ST3GAL6",0,0.774391991023885,0.316,0.007,0
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genesets/genes.deg.Epi.csv
+ 117
− 116
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
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genesets/genes.deg.Fib.csv
+ 115
− 106
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"APOD",0,3.34700332643494,0.769,0.192,0
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"PTGS2",0,2.63014778649894,0.773,0.173,0
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"TFPI2",0,2.06759905142515,0.506,0.166,0
"MEG3",0,1.92092257402216,0.892,0.243,0
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"SLC39A14",0,0.742102632793824,0.531,0.184,0
"GPNMB",0,0.730260774619616,0.354,0.061,0
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"PLTP",1.9350171371108e-305,0.705025383810055,0.346,0.059,4.40584051948758e-301
"SPON2",4.90374970565312e-300,0.777190453314663,0.265,0.021,1.11653477048016e-295
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"CREB5",7.81691769143134e-293,0.909589507875691,0.533,0.207,1.779833989162e-288
"FGFR1",3.79792534537651e-290,0.696124835275061,0.699,0.36,8.64749621888778e-286
"PGRMC1",7.75783106398507e-288,0.749211004132734,0.544,0.213,1.76638055495876e-283
"PSAP",8.13620250003017e-286,0.71212307241372,0.744,0.457,1.85253194723187e-281
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"FST",2.28819502974284e-275,1.67105584544224,0.31,0.053,5.20999126322147e-271
"FXYD6",2.85847143867433e-272,0.695414209390923,0.46,0.146,6.50845361871757e-268
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"CFH",1.52073795458156e-266,0.702352892918194,0.481,0.167,3.46256824878675e-262
"BDKRB2",2.1091376737311e-266,0.736405133322693,0.298,0.05,4.80229556931834e-262
"SFRP1",6.68711085611912e-259,0.888852442859336,0.31,0.057,1.52258827082976e-254
"NBL1",2.74140255722886e-256,0.719991642614835,0.585,0.267,6.24189948255439e-252
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"CTSL",1.25201774526608e-243,0.702431026945082,0.691,0.381,2.85071920419634e-239
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"RHOQ",6.48490288363753e-240,0.891603176221285,0.463,0.172,1.47654753757543e-235
"HSPA5",1.01847871243509e-237,1.2217214780378,0.72,0.454,2.31897418034345e-233
"THAP2",1.39551461215825e-237,1.04186462103576,0.389,0.121,3.17744722042311e-233
"LIF",5.94906275305764e-235,0.922061364514259,0.448,0.159,1.35454209824369e-230
"CCDC80",2.17945658248228e-228,0.725224416043556,0.329,0.08,4.96240469265389e-224
"GSN",8.760219757661e-220,1.08097489906941,0.698,0.462,1.99461443662183e-215
"C7",8.12698805928987e-216,1.10142785197399,0.34,0.101,1.85043391121971e-211
"GLIPR1",1.44663033408582e-214,0.716491622689206,0.273,0.054,3.29383260768001e-210
"CCK",8.158998637692e-199,1.4400534297863,0.275,0.067,1.85772239981609e-194
"ADM",5.37256769109873e-190,0.855664123997103,0.482,0.224,1.22327993758627e-185
"THBS1",1.95550032573137e-161,0.763123755278805,0.42,0.19,4.45247869165776e-157
"GPRC5A",2.24630620472003e-153,0.71065689855295,0.437,0.209,5.11461459752704e-149
"IER3",3.97972437189042e-149,0.778244585705583,0.838,0.707,9.0614344223573e-145
"PLIN2",4.64293835049652e-141,0.798864473248875,0.608,0.396,1.05715063302455e-136
"CRYAB",1.11145475809686e-137,1.18921603749194,0.613,0.394,2.53067133871074e-133
"CYR61",7.10673777516612e-128,1.36202339131436,0.362,0.17,1.61813312402757e-123
"A2M",2.16563471975676e-107,0.961615100638997,0.52,0.362,4.93093369341418e-103
"IL33",6.7388936754001e-72,1.01809076938948,0.317,0.186,1.53437870095185e-67
"CXCL1",3.09997007522783e-60,1.08126356817276,0.445,0.318,7.05832186428625e-56
"HERPUD1",3.51393628489524e-50,0.801499889330805,0.466,0.343,8.00088152707798e-46
"CXCL8",4.31163807778079e-47,0.717364288623863,0.823,0.782,9.81716873929907e-43
genesets/genes.deg.LE.csv
+ 110
− 106
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"MSMB",0,4.65639267560884,0.937,0.136,0
"KLK3",0,4.18300959206087,0.916,0.058,0
"ACPP",0,3.64562408810046,0.861,0.033,0
"PLA2G2A",0,3.36456939895101,0.767,0.049,0
"KLK2",0,2.70881164656064,0.806,0.019,0
"MT1E",0,2.49482756674905,0.559,0.072,0
"MT1X",0,2.45606678605166,0.546,0.099,0
"MT1G",0,2.22001039510197,0.316,0.021,0
"TFF1",0,2.00729645106405,0.501,0.12,0
"GADD45B",0,1.97747840494441,0.554,0.264,0
"MT2A",0,1.9580911951167,0.879,0.486,0
"CLDN3",0,1.85774740186769,0.644,0.116,0
"TSPAN8",0,1.78687888620666,0.759,0.116,0
"CRYAB",0,1.75576483058518,0.423,0.09,0
"AZGP1",0,1.69501957094048,0.867,0.32,0
"RDH11",0,1.67541824693248,0.663,0.122,0
"CPE",0,1.60393927601431,0.749,0.192,0
"NEAT1",0,1.56672688506706,0.991,0.948,0
"SEC11C",0,1.54700454409623,0.672,0.165,0
"DHRS7",0,1.37809734460519,0.622,0.117,0
"NAMPT",0,1.36213751716574,0.733,0.379,0
"NPDC1",0,1.32843282560699,0.702,0.157,0
"VMP1",0,1.32485792364053,0.784,0.357,0
"TMC5",0,1.32072219281368,0.512,0.053,0
"CLDN4",0,1.31063846769978,0.905,0.701,0
"TSC22D1",0,1.25248764313737,0.723,0.424,0
"ADIRF",0,1.24254099146079,0.775,0.361,0
"GP2",0,1.23052611791644,0.303,0.003,0
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"ZFP36",0,1.18772951045845,0.717,0.445,0
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"MT1M",0,1.13930784356952,0.254,0.012,0
"LINC00844",0,1.13476923692228,0.373,0.011,0
"H2AFJ",0,1.13461022366971,0.762,0.406,0
"SMIM14",0,1.11727251576557,0.609,0.15,0
"HMGCS1",0,1.10393810880788,0.425,0.131,0
"ERRFI1",0,1.09986512341021,0.508,0.206,0
"CCK",0,1.07558432811335,0.26,0.01,0
"PPP3CA",0,1.03850186500901,0.482,0.079,0
"NDRG1",0,1.0365074647518,0.553,0.199,0
"PMEPA1",0,1.03488358216563,0.545,0.147,0
"DSC2",0,1.00229283676135,0.439,0.089,0
"KLK4",0,0.995023602545593,0.367,0.005,0
"FXYD3",0,0.979735821940056,0.874,0.645,0
"ELOVL5",0,0.979407006074019,0.525,0.143,0
"TPD52",0,0.958959048299744,0.605,0.232,0
"TM4SF1",0,0.955962804051572,0.886,0.84,0
"RNF144B",0,0.952739823633275,0.37,0.073,0
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"CIB1",0,0.921310365586424,0.832,0.599,0
"PSCA",0,0.920127806369514,0.549,0.169,0
"RPS27L",0,0.906031102749022,0.511,0.188,0
"SARAF",0,0.904106680468622,0.658,0.273,0
"RAB27B",0,0.894125357614522,0.377,0.044,0
"SAT1",0,0.890101161693277,0.992,0.995,0
"RASEF",0,0.876273111178528,0.475,0.127,0
"PLPP1",0,0.87082458862355,0.335,0.076,0
"NGFRAP1",0,0.870041125554972,0.506,0.139,0
"EFNA1",0,0.853174757103486,0.522,0.265,0
"IDH2",0,0.853100477982824,0.502,0.188,0
"SLC12A2",0,0.847382565219894,0.358,0.059,0
"RNF213",0,0.817361739869844,0.388,0.13,0
"SH3BP4",0,0.814691546110436,0.384,0.09,0
"PNRC1",0,0.813208736318021,0.784,0.631,0
"MALAT1",0,0.809993300877315,1,0.999,0
"STEAP2",0,0.80604797134043,0.323,0.05,0
"ALDH1A3",0,0.795077726968272,0.706,0.503,0
"CDKN1A",0,0.778939393009299,0.49,0.223,0
"BASP1",0,0.773768632023964,0.37,0.083,0
"SNRPN",0,0.77368697976306,0.404,0.083,0
"MPC2",0,0.7729547456109,0.527,0.258,0
"LBH",0,0.772123905695272,0.292,0.064,0
"FLJ20021",0,0.759198138645681,0.27,0.04,0
"SPOCK1",0,0.744634801503951,0.302,0.014,0
"INSIG1",0,0.743632899535874,0.469,0.197,0
"B2M",0,0.742692232647999,0.999,0.995,0
"GDE1",0,0.741445457375622,0.403,0.124,0
"SORD",0,0.740725859378873,0.406,0.166,0
"PART1",0,0.737466070954408,0.293,0.025,0
"TSTD1",0,0.734721587569535,0.709,0.426,0
"MEAF6",0,0.733108783592346,0.594,0.308,0
"PDE4B",0,0.72817792903269,0.338,0.075,0
"TMEM59",0,0.72452734732913,0.841,0.6,0
"FNIP2",0,0.72285290029097,0.31,0.063,0
"SERF2",0,0.712930264213387,0.967,0.931,0
"LCP1",0,0.710141825411174,0.279,0.005,0
"ARID5B",6.92157025721938e-283,0.705142913750497,0.443,0.213,1.57597233186628e-278
"ID1",5.84759575942586e-271,0.982795154666035,0.565,0.347,1.33143907846367e-266
"ID3",2.16557362824754e-269,0.759891816985363,0.308,0.115,4.93079459415682e-265
"EMP1",1.26754287678576e-247,0.996297191466346,0.541,0.356,2.8860683761535e-243
"TGIF1",5.16358800452248e-234,0.737515425879003,0.521,0.324,1.17569735274972e-229
"LMO7",4.9313368212529e-212,0.714258240639189,0.599,0.434,1.12281608083107e-207
"PHLDA2",3.41463250880095e-169,0.780130613275948,0.811,0.757,7.77477675928888e-165
"KLF6",2.71266092239173e-168,0.875835869270813,0.541,0.39,6.17645765419373e-164
"TIMP1",2.31491306978885e-158,0.783262835836252,0.773,0.693,5.27082556860223e-154
"JUN",1.47223260495376e-37,1.11963479690616,0.593,0.571,3.35212641821922e-33
"HSPA1A",3.47673419965785e-05,0.915320246199519,0.342,0.342,0.791617609920095
"MSMB",0,4.72329455992227,0.955,0.137,0
"KLK3",0,4.21192965880628,0.937,0.059,0
"ACPP",0,3.68864654618114,0.885,0.032,0
"PLA2G2A",0,3.4035678624068,0.786,0.049,0
"KLK2",0,2.73049235256229,0.826,0.02,0
"MT1E",0,2.38388644259479,0.562,0.08,0
"MT1X",0,2.20579245340183,0.546,0.112,0
"MT1G",0,2.10339427019239,0.318,0.022,0
"TFF1",0,2.02156955762182,0.511,0.118,0
"GADD45B",0,1.90371967131237,0.559,0.273,0
"CLDN3",0,1.87594829839121,0.655,0.114,0
"MT2A",0,1.8406782842313,0.878,0.497,0
"TSPAN8",0,1.81893594907816,0.779,0.117,0
"AZGP1",0,1.72075160074135,0.884,0.315,0
"RDH11",0,1.70083659653854,0.678,0.119,0
"NEAT1",0,1.63000470940052,0.993,0.943,0
"CPE",0,1.6075748023562,0.766,0.198,0
"SEC11C",0,1.57385022149377,0.688,0.161,0
"CRYAB",0,1.40042966989096,0.41,0.099,0
"DHRS7",0,1.38719001719879,0.632,0.118,0
"NAMPT",0,1.36720378347625,0.74,0.38,0
"NPDC1",0,1.34799957571958,0.717,0.156,0
"TMC5",0,1.33676044583128,0.525,0.053,0
"CLDN4",0,1.29573151344925,0.917,0.697,0
"VMP1",0,1.28715506022378,0.787,0.366,0
"ADIRF",0,1.27135125347254,0.783,0.35,0
"TSC22D1",0,1.25319502728026,0.734,0.425,0
"TMPRSS2",0,1.2506962842439,0.604,0.108,0
"GP2",0,1.24738103348027,0.31,0.003,0
"IL6ST",0,1.21487799867034,0.618,0.15,0
"DBI",0,1.20809985743553,0.714,0.294,0
"GLRX",0,1.17279517383489,0.342,0.057,0
"ZFP36",0,1.15213801259926,0.727,0.45,0
"H2AFJ",0,1.15035982632055,0.773,0.405,0
"LINC00844",0,1.13867131481826,0.379,0.013,0
"SMIM14",0,1.13505854558001,0.623,0.149,0
"HMGCS1",0,1.10759510583652,0.43,0.132,0
"CCK",0,1.08683277545011,0.266,0.01,0
"MT1M",0,1.07872341834805,0.253,0.014,0
"ATF3",0,1.06818241656393,0.499,0.199,0
"PPP3CA",0,1.05415644945534,0.492,0.078,0
"PMEPA1",0,1.04062905560189,0.558,0.148,0
"NDRG1",0,1.03273031956454,0.558,0.2,0
"FXYD3",0,1.02419690835194,0.895,0.636,0
"DSC2",0,1.0176550653856,0.448,0.088,0
"KLK4",0,1.01220187608899,0.376,0.005,0
"ERRFI1",0,1.00767465575411,0.512,0.219,0
"ELOVL5",0,0.98675430229638,0.532,0.144,0
"TPD52",0,0.982568612384674,0.619,0.229,0
"UQCRQ",0,0.971602125822482,0.783,0.499,0
"RNF144B",0,0.966519266594982,0.378,0.073,0
"AGR2",0,0.962250152124186,0.673,0.254,0
"PSCA",0,0.960304409065283,0.563,0.164,0
"SLC44A4",0,0.946441092542011,0.595,0.164,0
"SLC39A6",0,0.944657831835548,0.587,0.192,0
"SOCS2",0,0.936594149356076,0.417,0.063,0
"TM4SF1",0,0.934398614214217,0.9,0.838,0
"CIB1",0,0.934034922566842,0.843,0.596,0
"ELL2",0,0.927171985289241,0.491,0.112,0
"RASEF",0,0.924694243313144,0.49,0.117,0
"RAB27B",0,0.916645324862185,0.387,0.043,0
"SARAF",0,0.89644509711326,0.663,0.276,0
"RPS27L",0,0.892687303535395,0.511,0.19,0
"MT1F",0,0.88239665064287,0.284,0.018,0
"SAT1",0,0.881485890482231,0.992,0.994,0
"EFNA1",0,0.876046543534716,0.535,0.261,0
"PLPP1",0,0.873514881142468,0.342,0.077,0
"SLC12A2",0,0.868899438440058,0.369,0.059,0
"IDH2",0,0.866114475892644,0.511,0.187,0
"RNF213",0,0.830830891901401,0.392,0.128,0
"ALDH1A3",0,0.823381648220727,0.718,0.495,0
"STEAP2",0,0.820709308050666,0.331,0.049,0
"NGFRAP1",0,0.817474805318914,0.506,0.146,0
"MALAT1",0,0.8003965331397,1,0.999,0
"BASP1",0,0.785264442261139,0.379,0.084,0
"FLJ20021",0,0.779850895812696,0.278,0.04,0
"MPC2",0,0.778677476200579,0.534,0.258,0
"LBH",0,0.77608974653234,0.298,0.065,0
"GDE1",0,0.771557807875331,0.413,0.117,0
"B2M",0,0.768885401681052,0.999,0.994,0
"SORD",0,0.762561222139147,0.413,0.16,0
"SNRPN",0,0.761578996219057,0.407,0.087,0
"SPOCK1",0,0.759973711569768,0.31,0.014,0
"SH3BP4",0,0.745762365156401,0.384,0.102,0
"TSTD1",0,0.744561019012511,0.718,0.426,0
"PART1",0,0.743203873793746,0.299,0.026,0
"SERF2",0,0.740955003712656,0.972,0.927,0
"INSIG1",0,0.739285935352068,0.472,0.196,0
"FNIP2",0,0.728598599292103,0.314,0.063,0
"LCP1",0,0.722775528928792,0.285,0.005,0
"PDE4B",0,0.721856359324667,0.344,0.08,0
"TMEM59",0,0.721096278065682,0.846,0.601,0
"MEAF6",0,0.720869031665943,0.598,0.314,0
"AQP3",0,0.71501035203829,0.892,0.746,0
"FRMD4B",0,0.706377302273844,0.304,0.054,0
"ABHD2",0,0.705975873081945,0.48,0.167,0
"GOLM1",0,0.70335058330781,0.307,0.04,0
"CDKN1A",0,0.69528987774872,0.485,0.227,0
"ID1",2.05553600480148e-299,1.00533796101853,0.577,0.343,4.68024992933248e-295
"PNRC1",6.67619040619503e-289,0.777968957084708,0.786,0.637,1.52010179358655e-284
"LMO7",2.01335006215896e-256,0.75807719580843,0.612,0.418,4.58419675652974e-252
"EMP1",5.9882485055922e-255,1.02161419351431,0.538,0.346,1.36346430223829e-250
"ID3",8.18381352003567e-250,0.722437614672048,0.312,0.121,1.86337250037692e-245
"TGIF1",8.10892930493929e-228,0.722616975207138,0.525,0.328,1.84632211344163e-223
"PHLDA2",4.65123452276623e-171,0.781231887947314,0.817,0.754,1.05903958848864e-166
"TIMP1",1.14837092468666e-159,0.782342884545219,0.773,0.69,2.61472575841905e-155
"KLF6",7.50912285905151e-129,0.763249097019106,0.537,0.405,1.70975218377744e-124
"CEACAM1",4.06056547989492e-91,0.700477986456876,0.443,0.336,9.24550154117275e-87
"JUN",1.63057995588647e-28,1.0179687160569,0.593,0.578,3.7126675015579e-24
"HSPA1A",1.24755423446435e-08,0.930112783198633,0.348,0.335,0.000284055623645188
genesets/genes.deg.Leu.csv
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genesets/genes.deg.NE.csv
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genesets/genes.deg.OE1.csv
+ 57
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"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"SCGB3A1",0,4.10316781944943,0.86,0.176,0
"LCN2",0,3.03100623435005,0.961,0.452,0
"PIGR",0,2.88876110751744,0.731,0.059,0
"OLFM4",0,2.81696456306496,0.415,0.034,0
"RARRES1",0,2.21301970471149,0.793,0.147,0
"FCGBP",0,2.04030378620349,0.537,0.028,0
"LTF",0,1.79421847393519,0.269,0.024,0
"WFDC2",0,1.77743435999713,0.965,0.594,0
"CD74",0,1.70298878174624,0.819,0.331,0
"PSCA",0,1.63458208227121,0.746,0.188,0
"PI3",0,1.62060937043814,0.464,0.039,0
"SLPI",0,1.59203032592281,0.95,0.464,0
"FAM3D",0,1.59114200584685,0.663,0.067,0
"GDF15",0,1.54498145756597,0.736,0.318,0
"DUOXA2",0,1.53561146330085,0.543,0.107,0
"HLA-DRA",0,1.51269900895577,0.643,0.128,0
"AGR2",0,1.49575092178138,0.855,0.321,0
"SPINK1",0,1.44140968403144,0.666,0.184,0
"S100P",0,1.42797707184201,0.872,0.384,0
"MMP7",0,1.35918174426115,0.644,0.247,0
"CXCL6",0,1.32680471119305,0.463,0.123,0
"C15orf48",0,1.31775691101705,0.687,0.226,0
"TXNIP",0,1.30137769219726,0.87,0.402,0
"GLUL",0,1.23018413181964,0.869,0.552,0
"DUSP5",0,1.21622265897113,0.759,0.288,0
"SERPINB3",0,1.19314445157791,0.287,0.07,0
"ZG16B",0,1.19006227548739,0.733,0.287,0
"CXCL17",0,1.17782396432616,0.831,0.332,0
"ANKRD36C",0,1.10610182068891,0.67,0.204,0
"HLA-DRB1",0,1.09095770268204,0.516,0.103,0
"RHOV",0,1.06130445189727,0.515,0.145,0
"ADGRF1",0,0.993176681577909,0.62,0.159,0
"CRABP2",0,0.989282561680297,0.623,0.179,0
"CEACAM6",0,0.93830092156486,0.411,0.071,0
"AZGP1",0,0.919930851943473,0.853,0.342,0
"S100A6",0,0.903521678116308,0.998,0.958,0
"CP",0,0.900058347396105,0.432,0.05,0
"ATP1B1",0,0.891748196100055,0.551,0.175,0
"TMEM45B",0,0.854004102290454,0.494,0.113,0
"AGR3",0,0.849411933966337,0.297,0.022,0
"PDZK1IP1",0,0.843163648602393,0.399,0.059,0
"TMSB4X",0,0.837121536265905,0.995,0.937,0
"SRD5A3",0,0.83536193014454,0.347,0.039,0
"BIK",0,0.834215630324876,0.479,0.133,0
"FTH1",0,0.83252505937909,1,0.999,0
"ZFP36L1",0,0.830103859833015,0.759,0.529,0
"ASS1",0,0.827838827506292,0.671,0.302,0
"RARRES3",0,0.791884166530158,0.498,0.187,0
"VSIG2",0,0.789100084979421,0.554,0.173,0
"HLA-DRB5",0,0.786059817810104,0.325,0.032,0
"TFF1",0,0.77392781559783,0.522,0.13,0
"CEACAM5",0,0.761031263450695,0.344,0.066,0
"FOXO3",0,0.749468681612553,0.578,0.238,0
"TMEM165",0,0.738064857444424,0.743,0.476,0
"TSPAN1",0,0.730183724801808,0.652,0.299,0
"RNF39",0,0.730182762188774,0.459,0.155,0
"HIST1H1C",0,0.726964596768432,0.75,0.489,0
"CCL28",0,0.720566188966463,0.269,0.022,0
"HIST1H2AC",0,0.719584779035374,0.444,0.144,0
"HIGD1A",0,0.706091877290049,0.673,0.364,0
"TSPAN13",0,0.703982314715806,0.539,0.189,0
"HIST1H2BC",0,0.697455508963826,0.388,0.116,0
"CYP3A5",0,0.695761497882344,0.678,0.315,0
"REEP3",0,0.694741134171862,0.65,0.34,0
"HPGD",2.48552890420738e-127,0.830921868770923,0.35,0.189,5.65930076198978e-123
"SCGB3A1",0,4.03855188386607,0.814,0.17,0
"LCN2",0,2.97089524061458,0.93,0.444,0
"PIGR",0,2.83121652074947,0.673,0.056,0
"OLFM4",0,2.72207055211581,0.38,0.033,0
"RARRES1",0,2.15360872232365,0.751,0.144,0
"FCGBP",0,1.95058930401031,0.485,0.027,0
"SLPI",0,1.87017677134175,0.937,0.456,0
"WFDC2",0,1.77045405444995,0.955,0.592,0
"LTF",0,1.72575374492475,0.256,0.022,0
"CD74",0,1.6365420996732,0.789,0.326,0
"PI3",0,1.55943984777837,0.425,0.038,0
"PSCA",0,1.55678448792669,0.698,0.184,0
"FAM3D",0,1.53061470515414,0.621,0.063,0
"GDF15",0,1.52479011674675,0.719,0.311,0
"DUOXA2",0,1.46841257955522,0.5,0.104,0
"HLA-DRA",0,1.44575370537358,0.6,0.124,0
"AGR2",0,1.44370921726969,0.822,0.313,0
"SPINK1",0,1.41253661157524,0.632,0.178,0
"S100P",0,1.37436581544029,0.837,0.376,0
"MMP7",0,1.35749349757673,0.628,0.243,0
"C15orf48",0,1.2890984505648,0.657,0.22,0
"CXCL6",0,1.26478718454854,0.433,0.122,0
"TXNIP",0,1.25981099830587,0.843,0.396,0
"GLUL",0,1.19181255161059,0.843,0.546,0
"SERPINB3",0,1.19066545727824,0.274,0.067,0
"CXCL17",0,1.1673151585011,0.808,0.324,0
"DUSP5",0,1.16455561930696,0.725,0.286,0
"ZG16B",0,1.13752073014104,0.7,0.284,0
"ANKRD36C",0,1.08901081297919,0.646,0.196,0
"CRABP2",0,1.03440841543924,0.618,0.174,0
"HLA-DRB1",0,1.03401587762012,0.484,0.101,0
"RHOV",0,1.02496745744618,0.5,0.141,0
"ADGRF1",0,0.966018329016631,0.59,0.153,0
"CEACAM6",0,0.902408793079434,0.388,0.068,0
"S100A6",0,0.883575469783997,0.997,0.958,0
"ATP1B1",0,0.87003074608223,0.531,0.173,0
"AZGP1",0,0.862138307397993,0.831,0.337,0
"CP",0,0.85082415281186,0.398,0.048,0
"TMSB4X",0,0.842740303863039,0.994,0.935,0
"TMEM45B",0,0.821781797674659,0.467,0.109,0
"ASS1",0,0.811664179595814,0.649,0.294,0
"PDZK1IP1",0,0.81103608451588,0.378,0.057,0
"ZFP36L1",0,0.800584439996796,0.758,0.531,0
"FTH1",0,0.799470126216098,1,0.999,0
"BIK",0,0.797654629475307,0.457,0.13,0
"AGR3",0,0.786735701575968,0.267,0.021,0
"SRD5A3",0,0.781447190934399,0.321,0.037,0
"RARRES3",0,0.756533189119747,0.476,0.184,0
"TFF1",0,0.756252037583118,0.493,0.127,0
"TSPAN1",0,0.743915922072676,0.644,0.294,0
"VSIG2",0,0.743037932849829,0.517,0.169,0
"CEACAM5",0,0.732797379961459,0.324,0.063,0
"HLA-DRB5",0,0.726964324005891,0.296,0.031,0
"FOXO3",0,0.717682027241627,0.553,0.235,0
"TMEM165",0,0.707082002795108,0.719,0.472,0
"HIGD1A",0,0.693286964982266,0.656,0.36,0
"HPGD",4.1645372957255e-124,0.795872125736211,0.336,0.185,9.48223496863738e-120
genesets/genes.deg.OE2.csv
+ 22
− 23
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"AKR1C1",0,1.80468576368699,0.707,0.083,0
"AKR1C2",0,1.79883233414128,0.746,0.072,0
"CSTB",0,1.59537748980111,0.963,0.723,0
"HPGD",0,1.43909184759577,0.623,0.14,0
"IGFBP3",0,1.4187950083546,0.87,0.263,0
"S100P",0,1.38192879392128,0.94,0.363,0
"DHRS9",0,1.36215108992249,0.483,0.039,0
"GPX2",0,1.26931921879429,0.798,0.224,0
"KRT13",0,1.23439591316687,0.803,0.238,0
"KRT6A",0,1.19529706522013,0.37,0.068,0
"FABP5",0,1.17430010647331,0.473,0.162,0
"SERPINB1",0,1.05568994860816,0.795,0.287,0
"SDCBP2",0,1.02045797280887,0.819,0.3,0
"KIAA1551",0,0.898132001815361,0.664,0.221,0
"IL1RN",0,0.848044415554999,0.473,0.126,0
"OAF",0,0.838768721625209,0.558,0.107,0
"LYPD3",0,0.827990915275946,0.384,0.074,0
"CXCL17",0,0.81985480289248,0.74,0.336,0
"UBR4",0,0.796830881062289,0.463,0.162,0
"SDC1",0,0.768089005305213,0.62,0.197,0
"MGST1",0,0.764504904734781,0.883,0.486,0
"HECTD1",0,0.736364358102699,0.713,0.277,0
"B4GALT4",0,0.699305141590994,0.486,0.122,0
"AKR1C2",0,1.77872054939704,0.725,0.063,0
"AKR1C1",0,1.75053730673524,0.678,0.076,0
"CSTB",0,1.60866441171689,0.967,0.715,0
"IGFBP3",0,1.45467862956753,0.868,0.252,0
"HPGD",0,1.41948248309796,0.625,0.13,0
"S100P",0,1.37018451555765,0.939,0.348,0
"DHRS9",0,1.34537696834464,0.474,0.032,0
"KRT13",0,1.26082724566297,0.801,0.227,0
"GPX2",0,1.25816126744378,0.795,0.212,0
"KRT6A",0,1.24189839957088,0.378,0.06,0
"FABP5",0,1.1412126262124,0.461,0.157,0
"SERPINB1",0,1.08838916382847,0.803,0.276,0
"SDCBP2",0,1.02683722819571,0.818,0.286,0
"IL1RN",0,0.864591247929008,0.48,0.12,0
"KIAA1551",0,0.863080798435681,0.644,0.215,0
"LYPD3",0,0.861970576411272,0.394,0.067,0
"OAF",0,0.861882732376946,0.566,0.097,0
"CXCL17",0,0.839339024790727,0.746,0.325,0
"MGST1",0,0.785595229423377,0.881,0.473,0
"SDC1",0,0.775415933421429,0.624,0.189,0
"HECTD1",0,0.754808176562567,0.711,0.268,0
"UBR4",0,0.748078288938771,0.452,0.159,0
genesets/genes.deg.SM.csv
+ 76
− 77
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"RGS5",0,2.84217477001413,0.649,0.068,0
"GJA4",0,2.59510311915541,0.819,0.055,0
"ID4",0,2.30045060757805,0.702,0.185,0
"PDK4",0,1.88358233621593,0.756,0.326,0
"TAGLN",0,1.86673485993223,0.813,0.149,0
"MT1A",0,1.70750259846931,0.746,0.252,0
"NDUFA4L2",0,1.61285191246204,0.363,0.018,0
"CALD1",0,1.50374038623899,0.951,0.445,0
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"ADAMTS4",0,1.42145155927021,0.894,0.465,0
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"EPAS1",0,1.34938590566889,0.765,0.292,0
"KCNE4",0,1.32559832279194,0.466,0.081,0
"TIMP3",0,1.30727947953036,0.812,0.421,0
"ADAMTS1",0,1.28450526731158,0.63,0.231,0
"STEAP4",0,1.26855608007719,0.341,0.017,0
"CRISPLD2",0,1.22094016873225,0.742,0.279,0
"C11orf96",0,1.16951557618036,0.99,0.696,0
"PDGFRB",0,1.10381948879304,0.423,0.075,0
"TPM2",0,1.09875962836818,0.764,0.341,0
"NGF",0,1.07270940860361,0.319,0.016,0
"CPE",0,1.06649151485127,0.711,0.316,0
"ACTA2",0,1.03833191811917,0.373,0.062,0
"HES4",0,1.0338460906437,0.782,0.398,0
"FOXC2",0,1.00749967571481,0.287,0.018,0
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"PI15",9.20962021446351e-305,1.25762299316846,0.276,0.032,2.0969384266312e-300
"MT1M",5.74970545984034e-291,1.24742920724566,0.324,0.056,1.30915043615105e-286
"MFGE8",1.22271356292685e-284,0.979143091285059,0.637,0.298,2.78399651142814e-280
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"PROCR",1.11799126824834e-275,0.955507393479708,0.367,0.085,2.54555431867463e-271
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"BGN",1.08783462284234e-246,0.938995444077237,0.553,0.232,2.47689065274972e-242
"IGFBP4",2.05963287680697e-239,0.778118981058137,0.774,0.503,4.68957809720179e-235
"CTSC",3.55230667053458e-232,1.43817318516931,0.485,0.198,8.08824705814019e-228
"NDUFS2",1.10322465884287e-226,0.882731292542264,0.438,0.156,2.51193222571934e-222
"COL4A1",2.34874307314577e-215,0.802925261997758,0.681,0.435,5.3478531032456e-211
"C2orf40",6.30566612867243e-213,0.849242045795803,0.332,0.085,1.43573712083743e-208
"FRZB",2.30958574545067e-211,0.69396032610594,0.255,0.046,5.25869578381664e-207
"CD44",3.21709453324739e-211,0.715160428923202,0.782,0.465,7.32500254275099e-207
"GPX3",1.15214175983349e-205,0.874949741569048,0.617,0.33,2.62331157296488e-201
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"RNF152",9.39897483260337e-202,0.697518779615908,0.271,0.057,2.14005257963546e-197
"SLC25A4",4.49141970456552e-200,0.96939860203699,0.277,0.062,1.02265135253252e-195
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"C8orf4",4.22906715415466e-163,1.18045142001676,0.458,0.212,9.62916300329474e-159
"ZBTB38",2.01921545630532e-161,0.749402531119944,0.389,0.155,4.59755167246159e-157
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"H2AFJ",1.79963672237467e-140,0.69893413121794,0.542,0.311,4.09759285317488e-136
"MT1X",5.98153415477984e-138,1.02121757496168,0.581,0.352,1.36193551170182e-133
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"ZNF503",1.94204774711808e-118,0.765031310084782,0.272,0.098,4.42184851541315e-114
"MYC",8.84676921776568e-118,0.924353226636756,0.501,0.295,2.01432088319307e-113
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"RHOB",1.53686947938201e-18,0.773473296570367,0.326,0.268,3.49929811760491e-14
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"PPP1R14A",0,1.00009432137893,0.278,0.021,0
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"MFGE8",4.44005637404853e-279,0.965051188008075,0.62,0.295,1.01095643580711e-274
"C2orf40",1.72780015522823e-271,1.00160415868246,0.346,0.075,3.93402817343915e-267
"MT1M",4.09322603228702e-271,1.20300866179306,0.309,0.056,9.31986635291432e-267
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"MTHFD2",1.28331069200533e-228,0.866827910991022,0.582,0.3,2.92197011462693e-224
"FRZB",1.84534072632879e-223,0.716763576303028,0.253,0.043,4.20165629977802e-219
"BGN",2.89658781980626e-219,0.903312474427942,0.524,0.233,6.59524080691688e-215
"IGFBP4",2.47015331355755e-202,0.731827223012788,0.741,0.506,5.62429207963919e-198
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"NDUFS2",1.41155331231658e-194,0.83471933077748,0.411,0.159,3.21396573681363e-190
"CTSC",9.29739607811473e-193,1.37127850691473,0.453,0.201,2.11692411302594e-188
"GADD45B",1.74662171754805e-187,0.724294610044643,0.63,0.367,3.97688298868515e-183
"LPP",3.41246584729116e-178,0.889847491678599,0.518,0.281,7.76984348769725e-174
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"ZFHX3",1.38063797029975e-173,0.847583623179504,0.41,0.167,3.14357459457551e-169
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"GPX3",2.81776558823371e-171,0.812643532271655,0.585,0.335,6.41577046784934e-167
"MT1E",2.15072151950492e-168,0.912013307809576,0.317,0.102,4.89697782776075e-164
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"NR4A1",2.76606263026314e-151,0.784708301112588,0.498,0.257,6.29804800284614e-147
"KLF9",2.24926644961699e-149,0.718958499925294,0.505,0.282,5.12135477913292e-145
"ID3",1.97869281845556e-146,0.870540735631671,0.45,0.214,4.50528567834145e-142
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"MT1X",1.28011403238157e-131,0.98164874991959,0.57,0.351,2.9146916403296e-127
"SNAI2",7.65771385698709e-131,0.817244459174894,0.281,0.097,1.74358486809739e-126
"ATF3",3.38078345501085e-129,0.873055088181963,0.482,0.266,7.69770584871421e-125
"FHL1",2.92686544167832e-128,0.698902702249754,0.257,0.083,6.66417992415736e-124
"S100A4",6.7640885612477e-127,0.813603788520073,0.546,0.33,1.54011532451049e-122
"EDNRB",3.46683348091517e-125,0.830542867568308,0.505,0.296,7.89363315269574e-121
"CREM",1.7661271023662e-114,0.755512944263807,0.735,0.59,4.02129479937759e-110
"IGFBP6",2.44900099976123e-112,0.704598148297647,0.69,0.483,5.57613037635634e-108
"MYLK",1.0938825340627e-109,0.939748872270486,0.33,0.147,2.49066114180736e-105
"MYC",4.50230136851566e-109,0.897773167822691,0.486,0.295,1.02512899859733e-104
"ZNF503",7.65609691243077e-108,0.741555266262575,0.259,0.098,1.74321670599136e-103
"ISG15",1.19877357872602e-94,0.907201227654608,0.413,0.24,2.72948756140128e-90
"LMCD1",1.20511231091674e-92,0.861433127238133,0.367,0.191,2.74392022072632e-88
"HSPB1",6.59539364638025e-60,0.696267840359828,0.631,0.536,1.50170517934432e-55
"RHOB",2.01552919299791e-38,0.911728278154382,0.351,0.258,4.58915841953694e-34
genesets/genes.deg.St.csv
+ 168
− 174
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"IL6",0,3.83222827117699,0.631,0.017,0
"C11orf96",0,3.39741240618637,0.764,0.03,0
"APOD",0,3.3233098249467,0.455,0.028,0
"PTGDS",0,3.11185914403618,0.444,0.013,0
"IGFBP7",0,3.09577390039718,0.949,0.223,0
"CFD",0,2.87965559953506,0.518,0.079,0
"SPARCL1",0,2.85501480490708,0.889,0.072,0
"VIM",0,2.78516679666339,0.931,0.069,0
"MGP",0,2.64572728946282,0.731,0.091,0
"DCN",0,2.56985840305821,0.523,0.005,0
"FBLN1",0,2.56696502870112,0.493,0.108,0
"HMOX1",0,2.43442532404252,0.456,0.1,0
"IGFBP5",0,2.41452436378255,0.534,0.015,0
"CXCL2",0,2.39786745459436,0.48,0.147,0
"CSF3",0,2.39550060029667,0.438,0.019,0
"MMP1",0,2.33364687154921,0.265,0.05,0
"LUM",0,2.29476443198036,0.436,0.006,0
"LGALS1",0,2.22054382794355,0.861,0.133,0
"GEM",0,2.21529673825596,0.563,0.027,0
"TIMP1",0,2.21182481163388,0.908,0.704,0
"PTGS2",0,2.20242738406884,0.447,0.12,0
"STC1",0,2.18052568879162,0.282,0.004,0
"SERPINE2",0,2.12582821358359,0.367,0.058,0
"IGFBP6",0,2.08528275989008,0.535,0.113,0
"SERPINE1",0,2.08072172257491,0.442,0.008,0
"PLPP3",0,2.07835741477727,0.692,0.044,0
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"PDK4",0,1.92078362217074,0.426,0.157,0
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"CREM",0,1.85318854840945,0.627,0.093,0
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"GSN",0,1.47857589673768,0.562,0.205,0
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"MFAP4",0,1.44837935498606,0.368,0.002,0
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"RND3",0,1.02716303536898,0.444,0.255,0
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"C8orf4",0,0.944842584719257,0.269,0.077,0
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"COL6A1",0,1.03969735096566,0.36,0.014,0
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"DNAJB9",0,1.01875400457363,0.553,0.263,0
"CD200",0,1.01463720564476,0.266,0.032,0
"AKR1C1",0,1.00170299786904,0.385,0.169,0
"RND3",0,0.994181016143813,0.442,0.261,0
"VASN",0,0.982401711950547,0.263,0.013,0
"PDPN",0,0.978053763889563,0.286,0.039,0
"SDC2",0,0.970083687484457,0.35,0.061,0
"IFITM2",0,0.965485642448009,0.628,0.276,0
"PTPN1",0,0.961029009693622,0.362,0.057,0
"LAPTM4A",0,0.953571378139214,0.791,0.579,0
"C8orf4",0,0.94764326134623,0.268,0.076,0
"PLIN2",0,0.944575785522719,0.485,0.279,0
"CREB5",0,0.944140309248919,0.345,0.071,0
"PNP",0,0.941210482430765,0.394,0.086,0
"NR4A2",0,0.939985558327142,0.34,0.086,0
"ISG15",0,0.934627114913036,0.283,0.07,0
"EPAS1",0,0.932269609185218,0.401,0.142,0
"IFITM3",0,0.931957770192618,0.861,0.617,0
"GPX3",0,0.931497303137261,0.396,0.133,0
"UBB",0,0.924900739394498,0.887,0.635,0
"FGFR1",0,0.917120003940927,0.503,0.157,0
"DDIT4",0,0.908432281674326,0.323,0.154,0
"LIMS1",0,0.90372187561546,0.466,0.174,0
"CSRP2",0,0.898007481127313,0.377,0.121,0
"FTL",0,0.893942877201924,0.998,0.996,0
"AEBP1",0,0.874459521236515,0.338,0.036,0
"NR4A1",0,0.873238872879497,0.316,0.09,0
"LTBP4",0,0.866683457759609,0.338,0.071,0
"PCOLCE",0,0.865910219714862,0.262,0.004,0
"RHOB",0,0.864086450020013,0.281,0.097,0
"BTG1",0,0.857544611601685,0.867,0.73,0
"WWTR1",0,0.85271216265333,0.362,0.118,0
"RHOQ",0,0.846979853227914,0.295,0.075,0
"GLA",0,0.834823276102309,0.301,0.047,0
"EIF1B",0,0.830997608235681,0.529,0.306,0
"FXYD6",0,0.816490624203156,0.279,0.008,0
"PNPLA8",0,0.797816846790294,0.491,0.191,0
"WBP5",0,0.790820131962337,0.605,0.292,0
"CST3",0,0.790025889095036,0.827,0.753,0
"ARID5B",0,0.784205028362322,0.521,0.254,0
"SLC39A14",0,0.780673358886188,0.331,0.058,0
"PRKAR1A",0,0.775708395845576,0.44,0.184,0
"LMO4",0,0.762940445091811,0.305,0.09,0
"ANKRD28",0,0.7565341396443,0.309,0.072,0
"KLF9",0,0.752214391375089,0.337,0.077,0
"AHCYL1",0,0.749464561805971,0.483,0.243,0
"ARID5A",0,0.749275269530449,0.343,0.073,0
"MAFG",0,0.74571827906605,0.536,0.256,0
"OAT",0,0.742038763971303,0.39,0.167,0
"RARRES2",0,0.741435159934689,0.351,0.129,0
"CFH",0,0.727893285807187,0.3,0.087,0
"GLIS3",0,0.724613577640736,0.297,0.035,0
"IL32",0,0.721396684677312,0.367,0.158,0
"ATP1B3",0,0.719717331677236,0.785,0.584,0
"THBS1",0,0.713089018835307,0.287,0.127,0
"BST2",0,0.711637632506822,0.284,0.032,0
"JAG1",0,0.708496825636824,0.265,0.048,0
"PRNP",0,0.702087750531578,0.526,0.284,0
"LDHA",0,0.700669884442668,0.79,0.628,0
"COL4A2",0,0.694357526237381,0.289,0.022,0
"NDRG1",1.82692995180184e-286,0.719501582983685,0.435,0.286,4.15973680725761e-282
"PTP4A1",3.55273258810232e-270,0.716116926186478,0.416,0.276,8.08921682985017e-266
"SERPINF1",2.8519541275415e-264,1.0546087166307,0.411,0.287,6.49361435299925e-260
"ID3",6.48625121100368e-219,0.89335620971468,0.272,0.148,1.47685453823343e-214
"HES4",2.21213782983384e-193,0.804092929299317,0.487,0.397,5.03681662474866e-189
"JUNB",2.93018070881872e-182,0.746456159671657,0.682,0.609,6.67172845590933e-178
"GADD45B",1.03953818083722e-179,1.09239173757044,0.432,0.321,2.36692448394827e-175
"TFPI2",3.05214086152293e-169,0.859656404860351,0.32,0.194,6.94941952760155e-165
"CXCL3",4.99326892045672e-165,1.16435430339294,0.261,0.152,1.13691740049879e-160
"CALD1",1.29094356898357e-155,0.72896651108397,0.562,0.465,2.93934941221869e-151
"ZFP36",9.85664132160035e-153,0.825317575696367,0.57,0.5,2.24425866251518e-148
"TM4SF1",5.48683054719367e-94,0.927147794751368,0.707,0.832,1.24929644729053e-89
"HSPA5",2.17280054785855e-70,0.731983845600481,0.566,0.519,4.94724956741914e-66
"DUSP1",8.18503659610553e-34,0.779219514767618,0.534,0.55,1.86365098256727e-29
"HSPA1A",2.74957663499795e-28,0.712730823674002,0.406,0.381,6.26051104022683e-24
"MYL9",6.6253956890852e-06,0.97978112807926,0.299,0.316,0.150853634444781
genesets/genes.deg.Stress.csv
+ 30
− 24
View file @ 81564f59
"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"JUN",0,3.4242844436487,0.961,0.585,0
"EGR1",0,3.30523759998749,0.82,0.201,0
"FOS",0,2.97332928749859,0.915,0.504,0
"GADD45B",0,2.79447860765143,0.893,0.345,0
"ATF3",0,2.77161847120145,0.887,0.257,0
"IER2",0,2.64121856822823,0.921,0.526,0
"HES1",0,2.61631488229266,0.768,0.272,0
"JUNB",0,2.589917637392,0.948,0.625,0
"EDN1",0,2.326885646471,0.627,0.166,0
"NR4A1",0,2.29566635667439,0.713,0.146,0
"ZFP36",0,2.19350013276048,0.905,0.515,0
"DDIT3",0,2.17011600296167,0.705,0.093,0
"ID1",0,2.02738574947544,0.757,0.317,0
"NFKBIA",0,2.01737627096191,0.981,0.777,0
"FOSB",0,1.98979572329452,0.805,0.3,0
"NCOA7",0,1.98348422041478,0.689,0.204,0
"PPP1R15A",0,1.87439416987139,0.965,0.691,0
"KLF6",0,1.86746635996515,0.881,0.432,0
"KLF10",0,1.84676236862048,0.716,0.178,0
"DUSP1",0,1.82589657655107,0.888,0.543,0
"RHOB",0,1.8071666735349,0.673,0.143,0
"BTG2",0,1.79292142986901,0.729,0.264,0
"ID3",0,1.73454884935116,0.655,0.178,0
"IER3",0,1.70446682628117,0.889,0.631,0
"JUN",0,3.63561104605396,0.998,0.589,0
"EGR1",0,3.55473561712687,0.944,0.205,0
"FOS",0,3.19823270107162,0.982,0.507,0
"GADD45B",0,3.04130067668239,0.988,0.349,0
"ATF3",0,2.96269389618837,0.969,0.263,0
"HES1",0,2.86271033785034,0.904,0.274,0
"IER2",0,2.85963639432825,0.979,0.53,0
"JUNB",0,2.7989840101511,0.99,0.628,0
"NR4A1",0,2.54031127927871,0.865,0.148,0
"ZFP36",0,2.40909630305211,0.972,0.518,0
"EDN1",0,2.40375541966816,0.606,0.174,0
"DDIT3",0,2.4021506342586,0.859,0.096,0
"ID1",0,2.23816940474119,0.855,0.319,0
"NFKBIA",0,2.21433819842861,0.993,0.78,0
"FOSB",0,2.19505001280207,0.895,0.304,0
"NCOA7",0,2.12092235036586,0.733,0.209,0
"KLF10",0,2.06370682774238,0.857,0.18,0
"PPP1R15A",0,2.0509084490677,0.995,0.694,0
"DUSP1",0,2.03419313784139,0.958,0.546,0
"RHOB",0,2.02780340612081,0.815,0.145,0
"KLF6",0,1.98970373524107,0.887,0.439,0
"IER3",0,1.95842094071026,0.936,0.633,0
"RASD1",0,1.94308420471023,0.544,0.063,0
"ID3",0,1.93507511936066,0.763,0.18,0
"BTG2",0,1.93295409238728,0.816,0.267,0
"CXCL3",0,1.77409122309313,0.733,0.18,0
"DNAJB1",0,1.77230403565517,0.805,0.23,0
"GADD45G",0,1.66973258552397,0.578,0.069,0
"IRF1",0,1.63332379461865,0.841,0.3,0
"ID2",0,1.62960688566593,0.68,0.162,0
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