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Commit 68fdeb80 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix min st cluster size for QuSAGE

parent dba99684
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1 merge request!4Merge ds
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r.scripts/sc-TissueMapper_RUN.Pd.R
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...@@ -312,7 +312,7 @@ names(gene.set1) <- "Leu" ...@@ -312,7 +312,7 @@ names(gene.set1) <- "Leu"
gene.set <- c(gene.set,gene.set1) gene.set <- c(gene.set,gene.set1)
rm(gene.set1) rm(gene.set1)
gc() gc()
min.st <- min(table(sc10x.Epi@meta.data[,paste0("res",opt$res.poststress)])) min.st <- min(table(sc10x.St@meta.data[,paste0("res",opt$res.poststress)]))
results <- scQuSAGE(sc10x.St,gs=gene.set,res.use=0.2,ds=min.st,nm="St.go",folder="st") results <- scQuSAGE(sc10x.St,gs=gene.set,res.use=0.2,ds=min.st,nm="St.go",folder="st")
sc10x.St <- results[[1]] sc10x.St <- results[[1]]
results.cor.St.go <- results[[2]] results.cor.St.go <- results[[2]]
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