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Commit 3861d456 authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix LE comparison for DEG for DS.D17

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r.scripts/sc-TissueMapper_RUN.DS_D17.R
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...@@ -351,7 +351,7 @@ genes.deg.Epi <- scDEG(sc10x,i="Lin",g.1="Epi",g.2="St",t=2) ...@@ -351,7 +351,7 @@ genes.deg.Epi <- scDEG(sc10x,i="Lin",g.1="Epi",g.2="St",t=2)
genes.deg.St <- scDEG(sc10x,i="Lin",g.1="St",g.2="Epi",t=2) genes.deg.St <- scDEG(sc10x,i="Lin",g.1="St",g.2="Epi",t=2)
genes.deg.BE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="BE",g.2=c("LE","OE_SCGB","OE_KRT13"),pct=0.25,t=2) genes.deg.BE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="BE",g.2=c("LE","OE_SCGB","OE_KRT13"),pct=0.25,t=2)
genes.deg.LE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="LE",g.2=c("BE","LE","OE_SCGB","OE_KRT13"),pct=0.25,t=2) genes.deg.LE <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="LE",g.2=c("BE","OE_SCGB","OE_KRT13"),pct=0.25,t=2)
genes.deg.OE1 <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="OE_SCGB",g.2=c("BE","LE","OE_KRT13"),pct=0.25,t=2) genes.deg.OE1 <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="OE_SCGB",g.2=c("BE","LE","OE_KRT13"),pct=0.25,t=2)
genes.deg.OE2 <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="OE_KRT13",g.2=c("BE","LE","OE_SCGB"),pct=0.25,t=2) genes.deg.OE2 <- scDEG(sc10x.Epi.NE,i="Epi.dws.sc",g.1="OE_KRT13",g.2=c("BE","LE","OE_SCGB"),pct=0.25,t=2)
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