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Commit 34b3bb6b authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Fix Lineage cluster ordering

parent 8d47b5bb
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r.scripts/sc_QuSAGE.Lineage.R
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...@@ -154,9 +154,8 @@ for (i in 1:Number.Clusters){ ...@@ -154,9 +154,8 @@ for (i in 1:Number.Clusters){
if ("?" %in% names(summary(sc10x.Group@ident))){ if ("?" %in% names(summary(sc10x.Group@ident))){
sc10x.Group@ident <- factor(sc10x.Group@ident,levels=c("Epi","St","?")) sc10x.Group@ident <- factor(sc10x.Group@ident,levels=c("Epi","St","?"))
} else { } else {
sc10x.Group@ident <- factor(sc10x.Group@ident,levels=c("Epi","St","?"))
}
sc10x.Group@ident <- factor(sc10x.Group@ident,levels=c("Epi","St")) sc10x.Group@ident <- factor(sc10x.Group@ident,levels=c("Epi","St"))
}
sc10x.Group <- StashIdent(object=sc10x.Group,save.name="Lineage") sc10x.Group <- StashIdent(object=sc10x.Group,save.name="Lineage")
#generate lineage tSNE #generate lineage tSNE
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