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Commit 1db9f6a9 authored by Gervaise Henry's avatar Gervaise Henry 🤠
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Add D17PrF DEGs for each population, updating scNE and scStress

parent e94edb7c
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"","p_val","avg_logFC","pct.1","pct.2","p_val_adj"
"JUN",0,3.52446619332614,0.97,0.579,0
"GADD45B",0,3.25814863485468,0.949,0.329,0
"EGR1",0,3.23237801038951,0.804,0.193,0
"FOS",0,3.03111276971855,0.895,0.491,0
"ATF3",0,2.71462329665876,0.866,0.252,0
"HES1",0,2.63289526569471,0.769,0.248,0
"JUNB",0,2.59936738347141,0.956,0.623,0
"IER2",0,2.57100457529959,0.892,0.521,0
"ZFP36",0,2.35880486416122,0.929,0.509,0
"NR4A1",0,2.19006681515921,0.713,0.142,0
"DDIT3",0,2.06653652151157,0.701,0.084,0
"ID1",0,1.96349454388333,0.733,0.286,0
"NFKBIA",0,1.88493996643466,0.946,0.794,0
"FOSB",0,1.87413931860456,0.747,0.289,0
"PPP1R15A",0,1.87016779081419,0.956,0.695,0
"KLF10",0,1.86789302002389,0.725,0.168,0
"KLF6",0,1.85522736466614,0.839,0.429,0
"NCOA7",0,1.82673949878027,0.604,0.206,0
"RHOB",0,1.76637179444964,0.674,0.136,0
"DUSP1",0,1.72958718365682,0.869,0.529,0
"ID3",0,1.71758331857321,0.668,0.167,0
"DNAJB1",0,1.71283463956435,0.694,0.216,0
"BTG2",0,1.67969758188443,0.676,0.254,0
"IER3",0,1.63391573730188,0.839,0.635,0
"HSPA1A",0,1.63277609618032,0.69,0.364,0
"IRF1",0,1.61744780502278,0.776,0.291,0
"GADD45G",0,1.61682572043469,0.524,0.054,0
"","x"
"1","CCL2"
"2","KRT14"
"3","CAV1"
"4","KRT23"
"5","RGCC"
"6","KRT5"
"7","KRT15"
"8","DKK1"
"9","LAYN"
"10","CLDN1"
"11","KRT17"
"12","ENO1"
"13","CAV2"
"14","PDCD5"
"15","MYC"
"16","PTRF"
"17","KRT7"
"18","NCL"
"19","NPM1"
"20","TUBB4B"
"21","ATP1B3"
"22","DST"
"23","RAN"
"24","EEF1B2"
"25","S100A2"
"26","PRMT1"
"27","SRSF3"
"28","PA2G4"
"29","AXL"
"30","TUBA1C"
"31","TUBA1B"
"32","RANBP1"
"33","SRM"
"34","SSB"
"35","SNRPD1"
"36","HBEGF"
"37","DEFB1"
"","x"
"1","MMP1"
"2","IFI27"
"3","HMOX1"
"4","SELE"
"5","ACKR1"
"6","CLDN5"
"7","CD200"
"8","CD93"
"9","SH3BGRL3"
"10","PCAT19"
"11","RAI14"
"12","SPRY1"
"13","LCN6"
"14","TMSB10"
"15","WWTR1"
"16","CALCRL"
"17","CFLAR"
"18","ZNF385D"
"19","HLA-DQB1"
"20","ASPH"
"21","VWF"
"22","TPM3"
"23","HLA-DPA1"
"24","ECSCR.1"
"25","PLVAP"
"26","ADGRL4"
"27","S100A10"
"28","SLC7A11"
"29","NQO1"
"30","MSN"
"31","HLA-DQA1"
"32","RHOC"
"33","ARPC1B"
"34","NOP10"
"35","BACE2"
"36","FXYD5"
"37","TM4SF18"
"38","HLA-DPB1"
"39","RDX"
"40","CLIC1"
"41","SWAP70"
"42","DUSP6"
"43","MRPL33"
"44","PNP"
"45","MED24"
"46","CNKSR3"
"47","LMO2"
"48","MGST2"
"49","PPFIBP1"
"50","COL15A1"
"51","NEURL1B"
"52","CDC37"
"53","RNASE1"
"54","ST3GAL6"
"55","ZEB1"
"56","RAPGEF5"
"57","GCLM"
"58","SOX17"
"59","RPS18"
"60","AP1S2"
"61","CDC42EP3"
"62","IL3RA"
"63","EMCN"
"64","RHOJ"
"65","FLT1"
"66","CD59"
"67","HSPA8"
"68","PGF"
"69","CARHSP1"
"70","ITM2A"
"71","ITGA2"
"72","RAB13"
"73","ARPC5L"
"74","TNPO1"
"75","UPP1"
"76","SH3BP5"
"77","INSR"
"78","MMP10"
"79","CXCL2"
"80","ANGPT2"
"","x"
"1","APOD"
"2","PTGDS"
"3","FBLN1"
"4","PTGS2"
"5","SERPINE2"
"6","PTN"
"7","HSD11B1"
"8","LUM"
"9","MMP2"
"10","DCN"
"11","CLMP"
"12","CFD"
"13","PDPN"
"14","FGF2"
"15","ANXA5"
"16","MFAP4"
"17","G0S2"
"18","RHOBTB3"
"19","HMGA1"
"20","LTBP4"
"21","TNFAIP6"
"22","SFRP2"
"23","PLAUR"
"24","S100A11"
"25","FGF7"
"26","SNCA"
"27","PLAT"
"28","KCNK1"
"29","TNFRSF12A"
"30","DNAJB9"
"31","MPZL1"
"32","ATP2B1"
"33","FBLN2"
"34","SEC62"
"35","LPAR1"
"36","GSTM3"
"37","GYPC"
"38","BDKRB2"
"39","PDGFRA"
"40","REEP5"
"41","CLU"
"42","RND3"
"43","ARSG"
"44","SCARB2"
"45","SPOCK3"
"46","CTSK"
"47","GJA1"
"48","NPC2"
"49","VCAN"
"50","SLC25A37"
"51","DPT"
"52","MYDGF"
"53","CXCL8"
"54","UAP1"
"55","PDIA6"
"56","HSP90B1"
"57","HSPA5"
"58","SPON2"
"59","MATN2"
"60","GPM6B"
"61","EFEMP1"
"62","CREB5"
"63","MANF"
"64","FST"
"65","IL33"
"66","MGP"
"67","SDF2L1"
"68","CD55"
"69","GSN"
"70","SFRP1"
"71","THBS2"
"72","C7"
"73","IL6"
"74","THAP2"
"75","HERPUD1"
"76","A2M"
"","x"
"1","MSMB"
"2","KLK3"
"3","ACPP"
"4","PLA2G2A"
"5","MT1X"
"6","KLK2"
"7","MT1G"
"8","MT2A"
"9","CLDN3"
"10","NEAT1"
"11","TSPAN8"
"12","SEC11C"
"13","NAMPT"
"14","RDH11"
"15","TMC5"
"16","GLRX"
"17","DHRS7"
"18","IL6ST"
"19","VMP1"
"20","SMIM14"
"21","CLDN4"
"22","H2AFJ"
"23","TMPRSS2"
"24","HMGCS1"
"25","CIB1"
"26","EMP1"
"27","DBI"
"28","LINC00844"
"29","TPD52"
"30","RNF144B"
"31","DSC2"
"32","GP2"
"33","ELL2"
"34","ALDH1A3"
"35","CRYAB"
"36","PPP3CA"
"37","IDH2"
"38","PMEPA1"
"39","ERRFI1"
"40","RAB27B"
"41","UQCRQ"
"42","FXYD3"
"43","RPS27L"
"44","MT1F"
"45","LMO7"
"46","SOCS2"
"47","RNF213"
"48","SLC44A4"
"49","SARAF"
"50","ELOVL5"
"51","RASEF"
"52","SLC39A6"
"53","SH3BP4"
"54","KLK4"
"55","GDE1"
"56","LBH"
"57","FLJ20021"
"58","SERF2"
"59","RDH10"
"60","FNIP2"
"61","MALAT1"
"62","ST6GAL1"
"63","ABHD2"
"64","NGFRAP1"
"65","PDE4B"
"66","TSTD1"
"67","SLC12A2"
"68","PART1"
"69","MEAF6"
"70","LCP1"
"71","BRI3"
"72","IL1R1"
"73","MPC2"
"74","FRMD4B"
"75","SNRPN"
"76","F11R"
"77","ATP1A1"
"78","SEMA4B"
"79","ZFP36"
"80","TGIF1"
"81","ID1"
"82","CEACAM1"
"","x"
"1","GRP"
"2","CHGA"
"3","SCG2"
"4","SCG5"
"5","MS4A8"
"6","LY6H"
"7","TPH1"
"8","CALCA"
"9","PHGR1"
"10","KLK12"
"11","RGS4"
"12","SCG3"
"13","JAKMIP2"
"14","HEPACAM2"
"15","ERICH3"
"16","MAOB"
"17","SLC18A1"
"18","NELL2"
"19","RIMBP2"
"20","NKAIN2"
"21","NELL1"
"22","FIBCD1"
"23","AC013463.2"
"24","TAGLN3"
"25","SCGN"
"26","SYP"
"27","SLC38A11"
"28","TMEM176B"
"29","CACNA1A"
"30","OVOS2"
"31","ESPN"
"32","CHGB"
"33","PRUNE2"
"34","UCHL1"
"35","AC034243.1"
"36","BEX1"
"37","PLEKHB1"
"38","TMEM178A"
"39","C1QTNF4"
"40","SYT1"
"41","PCSK1N"
"42","RAB17"
"43","VIPR1"
"44","TUBB2B"
"45","THSD7A"
"46","DNAJC12"
"47","NME7"
"48","DNER"
"49","MYEF2"
"50","SPATA6"
"51","LINC01089"
"52","C3orf14"
"53","ATP6V0E2"
"54","C4orf48"
"55","KANSL1L"
"56","RP11-489E7.4"
"57","IGFBP5"
"58","TET2"
"59","SMOC2"
"60","MAP9"
"61","TFF3"
"62","IZUMO4"
"63","C11orf49"
"64","PKIB"
"65","DMAP1"
"66","SPG11"
"67","TTC32"
"68","RP11-423H2.3"
"69","ITPR2"
"70","QPCT"
"71","CEP164"
"72","N4BP2"
"73","NUDT16L1"
"74","RNF167"
"75","TP53BP1"
"76","U2AF1L4"
"77","NAAA"
"78","EZH1"
"79","CCDC53"
"80","RP5-1042K10.10"
"81","QDPR"
"82","ABHD14A"
"83","COG3"
"84","PLS1"
"85","GUF1"
"86","PTPN4"
"87","ARRDC4"
"88","DAPL1"
"89","C22orf39"
"90","ATPIF1"
"91","SEC22C"
"92","MAGED1"
"93","FLCN"
"94","TMEM199"
"95","MAP1B"
"96","ZSWIM7"
"97","ABL2"
"98","C1orf132"
"99","RHBDD2"
"100","TMED4"
"101","IL20RA"
"102","CYB5B"
"103","GADD45G"
"104","ECD"
"105","ZNF428"
"106","RASD1"
"107","PNKD"
"108","DCTN3"
"109","ZBTB20"
"","x"
"1","SCGB3A1"
"2","PIGR"
"3","OLFM4"
"4","FCGBP"
"5","LTF"
"6","WFDC2"
"7","SLPI"
"8","FAM3D"
"9","PI3"
"10","C15orf48"
"11","MMP7"
"12","SERPINB3"
"13","ANKRD36C"
"14","ZG16B"
"15","CXCL6"
"16","RHOV"
"17","CRABP2"
"18","ASS1"
"19","TMEM45B"
"20","CEACAM6"
"21","S100A6"
"22","TMSB4X"
"23","ATP1B1"
"24","RARRES3"
"25","CP"
"26","ELF3"
"27","VSIG2"
"28","TSPAN1"
"29","BIK"
"30","PDZK1IP1"
"31","AGR3"
"32","CEACAM5"
"33","RNF39"
"34","FTH1"
"35","SRD5A3"
"36","FOXO3"
"37","LINC01207"
"38","ANXA1"
"39","TMEM165"
"40","CYP3A5"
"41","HIGD1A"
"42","CCL28"
"43","TSPAN13"
"44","HIST1H2AC"
"45","RAB11FIP1"
"46","REEP3"
"47","HIST1H2BC"
"48","TSPAN3"
"49","SERINC2"
"50","HIST1H1C"
"51","ZFP36L1"
"","x"
"1","AKR1C2"
"2","IGFBP3"
"3","DHRS9"
"4","KRT6A"
"5","FABP5"
"6","KRT13"
"7","HSPA1B"
"8","UBR4"
"9","SDC1"
"10","HECTD1"
"11","B4GALT4"
"12","FA2H"
"13","AKR1C3"
"14","TMPRSS4"
"15","IL1RN"
"16","LYPD3"
"17","MSLN"
"18","HSPA1A"
"19","AKAP12"
"","x"
"1","RGS5"
"2","GJA4"
"3","ID4"
"4","NDUFA4L2"
"5","MYH11"
"6","EPAS1"
"7","ADAMTS4"
"8","IFITM3"
"9","GAPDH"
"10","TINAGL1"
"11","ADRA2A"
"12","STEAP4"
"13","SRGN"
"14","IFITM2"
"15","MT1A"
"16","NGF"
"17","ACTA2"
"18","MCAM"
"19","PDK4"
"20","KCNE4"
"21","MTHFD2"
"22","CRISPLD2"
"23","FOXC2"
"24","ADAMTS1"
"25","PROCR"
"26","HES4"
"27","SYNPO2"
"28","PDGFRB"
"29","TIMP3"
"30","PPP1R14A"
"31","TPM1"
"32","COL4A1"
"33","RGS16"
"34","PI15"
"35","MYLK"
"36","LPP"
"37","CDKN1A"
"38","ZBTB38"
"39","SLC25A4"
"40","CTSC"
"41","ISG15"
"42","HIPK2"
"43","NDUFS2"
"44","C2orf40"
"45","HES1"
"46","HSPB1"
"47","NR2F2"
"48","ZFHX3"
"49","ZNF503"
"50","C8orf4"
"51","KLF6"
"52","SNAI2"
"53","RHOB"
......@@ -2,110 +2,111 @@ GRP
CHGA
SCG2
SCG5
LY6H
MS4A8
CALCA
LY6H
TPH1
KLK12
NELL2
SCG3
CALCA
PHGR1
HEPACAM2
KLK12
RGS4
SCG3
JAKMIP2
NKAIN2
HEPACAM2
ERICH3
MAOB
SLC18A1
ERICH3
NELL2
RIMBP2
NKAIN2
NELL1
TAGLN3
FIBCD1
AC013463.2
TAGLN3
SCGN
SYP
SLC38A11
CACNA1A
TMEM176B
CACNA1A
OVOS2
ESPN
CHGB
TPPP3
CHGB
PRUNE2
SAXO2
UCHL1
SYP
SCRG1
AC034243.1
BEX1
PLEKHB1
TMEM178A
C1QTNF4
BEX1
SLITRK6
SYT1
PCSK1N
VIPR1
RAB17
VIPR1
TUBB2B
NME7
THSD7A
DNAJC12
MYEF2
STMN3
NME7
DNER
MYEF2
SPATA6
C3orf14
LINC01089
C3orf14
ATP6V0E2
C4orf48
KANSL1L
RP11-489E7.4
DAPL1
IGFBP5
TET2
MAP9
SMOC2
MAP9
TFF3
IZUMO4
ALDH1A1
C11orf49
THSD7A
DMAP1
PKIB
RP11-423H2.3
DMAP1
SPG11
TTC32
RP11-423H2.3
ITPR2
QPCT
CEP164
NUDT16L1
N4BP2
NUDT16L1
RNF167
TTC39C
SYTL2
U2AF1L4
SPOCK1
TP53BP1
U2AF1L4
NAAA
RBP1
CCDC53
EZH1
ABHD14A
FAM76B
CCDC53
RP5-1042K10.10
COG3
GUF1
QDPR
ABHD14A
COG3
PLS1
ARRDC4
GUF1
PTPN4
ARRDC4
DAPL1
C22orf39
ATPIF1
SEC22C
MAGED1
FLCN
XAB2
TMEM199
MAP1B
ZSWIM7
ABL2
GADD45G
PPP3R1
C1orf132
RHBDD2
TCF4
ECD
TMED4
IL20RA
CYB5B
GADD45G
ECD
ZNF428
RASD1
DCTN3
IL20RA
PNKD
DCTN3
ZBTB20
......@@ -10,13 +10,18 @@ ZFP36
NR4A1
DDIT3
ID1
KLF6
PPP1R15A
NFKBIA
FOSB
NCOA7
PPP1R15A
KLF10
KLF6
NCOA7
RHOB
ID3
DUSP1
ID3
DNAJB1
BTG2
IER3
HSPA1A
IRF1
GADD45G
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