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Strand Lab
sc-TissueMapper
Commits
f83b35f5
Commit
f83b35f5
authored
Nov 19, 2020
by
Gervaise Henry
🤠
Browse files
Remove IsoModes from thresh
parent
f681be71
Changes
1
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Inline
Side-by-side
r.scripts/sc-TissueMapper_functions.R
View file @
f83b35f5
...
...
@@ -420,7 +420,7 @@ scThresh <- function(sc10x,feature,sub=FALSE){
thresh
<-
list
()
cutoff.l
<-
list
()
cutoff.h
<-
list
()
thresh_methods
<-
c
(
"IJDefault"
,
"Huang"
,
"Huang2"
,
"
IsoData"
,
"
Li"
,
"Mean"
,
"MinErrorI"
,
"Moments"
,
"Otsu"
,
"Percentile"
,
"RenyiEntropy"
,
"Shanbhag"
,
"Triangle"
)
#,"Intermodes"
thresh_methods
<-
c
(
"IJDefault"
,
"Huang"
,
"Huang2"
,
"Li"
,
"Mean"
,
"MinErrorI"
,
"Moments"
,
"Otsu"
,
"Percentile"
,
"RenyiEntropy"
,
"Shanbhag"
,
"Triangle"
)
#,"Intermodes"
,"IsoData"
for
(
i
in
names
(
sc10x
)){
scale
[[
i
]]
<-
data.frame
(
Score
=
sc10x
[[
i
]][[
feature
]])
colnames
(
scale
[[
i
]])
<-
"Score"
...
...
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