Commit 8c6a9f85 authored by Gervaise H. Henry's avatar Gervaise H. Henry 🤠

Merge branch 'master' into test.CNV_branch

parents 73892b82 072278b5
analysis/
*.err
*.out
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*.out
*.Rhistory
*.Rda
*.RData
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Determining cellular heterogeneity in the human prostate with single-cell RNA sequencing
========================================================================================
* Contact: Gervaise H. Henry
* Email: gervaise.henry@gutsouthwestern.edu
* Email: gervaise.henry@utsouthwestern.edu
* Institution: UT Southwestern Medical Center
* Department: Urology
# Data Analysis
## Data Analysis
* Requirements:
* 10x CellRanger analyzed data:
* "filtered\_gene\_bc\_matrice_mex" folder
......
......@@ -30,7 +30,7 @@
#SBATCH --mail-type ALL
#SBATCH --mail-user gervaise.henry@utsouthwestern.edu
module load R/3.3.2-gccmkl
module load R/3.4.1-gccmkl
# COMMAND GROUP 1
Rscript ../r.scripts/sc_Demultiplex.R
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
gc()
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
......
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.3")
.libPaths("/home2/ghenry/R/x86_64-pc-linux-gnu-library/3.4")
library(optparse)
library(Seurat)
library(readr)
......
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