Commit 514afab2 authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Change nFeature lower cutoff to 1000

parent a41f332f
......@@ -283,7 +283,7 @@ scQC <- function(sc10x,sp="hu",feature="nFeature_RNA"){
if (i %in% c("nFeature_RNA","percent.mito","percent.ribo","nCount_RNA")){
if (i == "nFeature_RNA"){
cutoff.h <- thresh[[i]][[j]]$threshold[thresh[[i]][[j]]$method=="RenyiEntropy"]
cutoff.l <- 200
cutoff.l <- 1000
} else if (i == "percent.mito") {
cutoff.h <- thresh[[i]][[j]]$threshold[thresh[[i]][[j]]$method=="Triangle"]
cutoff.l <- 0
......
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