Skip to content
Snippets Groups Projects
Commit eaf6a5ea authored by Gervaise Henry's avatar Gervaise Henry 🤠
Browse files

Merge branch 'develop' into 'master' 

Edit data descriptions and references

See merge request !37
parents e36c7ac5 96499f4e
2 merge requests!82Master,!37Edit data descriptions and references
Pipeline #6106 passed with stages
in 29 seconds
Hide whitespace changes
Inline Side-by-side
layouts/custom/hu.Pd.deep.html
+ 11
− 8
View file @ eaf6a5ea
......@@ -100,11 +100,11 @@
<span style="font-size:16px; font-weight:bold;">Experimental details:</span>
<br>
<span style="font-size:16px;">
Single Cell RNA-Sequencing was conducted on 32,194 cells from peripheral zone and transition zone from
the prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were
clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can
be compared by population identity, cell lineage, patient, or dissected prostatic zone. This data is the
result of additional sequencing done on the same samples post publication, and projected in UMAP space.
Single Cell RNA-Sequencing was conducted on cells from peripheral zone and transition zone from the
prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were clustered
and identified by correlation of their transcriptomes to known cell types. Gene expression can be
compared by population identity, cell lineage, dissected prostatic region. This data is the result of
additional sequencing done on the same samples post publication, and projected in UMAP space.
</span>
</div>
</div>
......@@ -143,10 +143,13 @@
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/pubmed/?term=30566875"
target="_blank">Cell Reports</a></span></div>
<div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div>
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145843"
target="_blank">Deeper Sequencing GEO: GSE145843</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW"
target="_blank">Deeper Sequencing GUDMAP: 16-WPBW</a></span></div>
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE117403"
target="_blank">GEO:
GSE117403</a></span></div>
<div><span style="font-size:16px;"><a href="https://doi.org/10.25548/W-R8CM" target="_blank">GUDMAP:
target="_blank">Original GEO: GSE117403</a></span></div>
<div><span style="font-size:16px;"><a href="https://doi.org/10.25548/W-R8CM" target="_blank">Original GUDMAP:
W-R8CM</a></span></div>
</div>
</div>
......
layouts/custom/hu.PdPgb.html
+ 12
− 13
View file @ eaf6a5ea
......@@ -103,11 +103,10 @@
<span style="font-size:16px; font-weight:bold;">Experimental details:</span>
<br>
<span style="font-size:16px;">
Single Cell RNA-Sequencing was conducted on 32,194 cells from peripheral zone and transition zone from
the prostate of three 18-38 year old organ donors using the 10x Genomics platform. The cells were
clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can
be compared by population identity, cell lineage, patient, or dissected prostatic zone. This data is the
result of additional sequencing done on the same samples post publication, and projected in UMAP space.
Single Cell RNA-Sequencing was conducted on cells from normal and BPH diseased prostates using the 10x
Genomics platform. The cells were clustered and identified by correlation of their transcriptomes to
known cell types. Gene expression can be compared by population identity, cell lineage, dissected
prostatic region, and disease phenotype.
</span>
</div>
</div>
......@@ -146,14 +145,14 @@
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615"
target="_blank">bioRxiv</a></span></div>
<div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div>
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615"
target="_blank">Human Normal Prostate GEO: GSEXXX</a></span></div>
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615"
target="_blank">Human Glandular BPH Prostate GEO: GSEXXX</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBT" target="_blank">Normal Human Prostate GUDMAP:
16-WPBT</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW" target="_blank">Glandular BPH Human Prostate GUDMAP:
16-WPBW</a></span></div>
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145843"
target="_blank">Human Normal Prostate GEO: GSE145843</a></span></div>
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145838"
target="_blank">Human Glandular BPH Prostate GEO: GSE145838</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBT"
target="_blank">Normal Human Prostate GUDMAP: 16-WPBT</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPBW"
target="_blank">Glandular BPH Human Prostate GUDMAP: 16-WPBW</a></span></div>
</div>
</div>
......
layouts/custom/mu.PrUr.html
+ 11
− 13
View file @ eaf6a5ea
......@@ -99,11 +99,9 @@
<div>
<span style="font-size:16px; font-weight:bold;">Experimental details:</span>
<br>
<span style="font-size:16px;">
Single Cell RNA-Sequencing was conducted on C57BL/6 mouse prostates and urethra. The cells were
clustered and identified by correlation of their transcriptomes to known cell types. Gene expression can
be compared by population identity, cell lineage, or tissue source.
</span>
<span style="font-size:16px;"> Single Cell RNA-Sequencing was conducted on C57BL/6 mouse prostates and
urethra. The cells were clustered and identified by correlation of their transcriptomes to known cell
types. Gene expression can be compared by population identity, cell lineage, or tissue source. </span>
</div>
</div>
<div align="center">
......@@ -141,14 +139,14 @@
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615"
target="_blank">bioRxiv</a></span></div>
<div><span style="font-size:18px; font-weight:bold;">Raw data found at:</span></div>
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615"
target="_blank">Mouse Prostate GEO: GSEXXX</a></span></div>
<div><span style="font-size:16px;"> <a href="https://doi.org/10.1101/2020.02.19.937615"
target="_blank">Mouse Urethra GEO: GSEXXX</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC0" target="_blank">Normal Human Prostate GUDMAP:
16-WPC0</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC2" target="_blank">Glandular BPH Human Prostate GUDMAP:
16-WPC2</a></span></div>
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145861"
target="_blank">Mouse Prostate GEO: GSE145861</a></span></div>
<div><span style="font-size:16px;"> <a href="https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE145865"
target="_blank">Mouse Urethra GEO: GSE145865</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC0"
target="_blank">Mouse Prostate GUDMAP: 16-WPC0</a></span></div>
<div><span style="font-size:16px;"><a href="https://www.gudmap.org/chaise/record/#2/RNASeq:Study/RID=16-WPC2"
target="_blank">Mouse Urethra GUDMAP: 16-WPC2</a></span></div>
</div>
</div>
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment