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Commit 92b4238d authored by Gervaise Henry's avatar Gervaise Henry :cowboy:
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Merge branch 'data.remove.lineage' into 'develop' 

Data update

See merge request !5
parents 4ad34110 4e70e75e
3 merge requests!9Develop,!7Develop,!5Data update
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config.toml
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− 6
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......@@ -49,12 +49,12 @@ paginate = 10
weight = 3
identifier = "publications"
url = "/publications/"
[[menu.main]]
name = "Biorepository"
pre = "<i class='fas fa-stethoscope fa-fw'></i>"
weight = 4
identifier = "repository"
url = "/repository/"
# [[menu.main]]
# name = "Biorepository"
# pre = "<i class='fas fa-stethoscope fa-fw'></i>"
# weight = 4
# identifier = "repository"
# url = "/repository/"
[[menu.main]]
name = "Single-Cell Data"
pre = "<i class='fas fa-chart-bar fa-fw'></i>"
......
data/scRNAseq_huPr_D/genes.json
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This source diff could not be displayed because it is too large. You can view the blob instead.
layouts/custom/data.html
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......@@ -24,7 +24,7 @@
.columnS {
float: left;
text-align: center;
width: 33.33%;
width: 50%;
}
.columnF {
float: left;
......@@ -61,28 +61,21 @@
<input id="gene" size="19">
</div>
<div class="columnS">
<label for="lineage" style="font-size:18px;"><b>Select a cell lineage to
display:</b></label>
<br>
<select name="lineage" id="lineage">
<option selected="selected" value="all">All Cells</option>
<option value="epi">Epithelial Cells Only</option>
<option value="st">Stromal Cells Only</option>
</select>
</div>
<div class="columnS">
<label for="populations" style="font-size:18px;"><b>Select a group of cell
populations:</b></label>
<label for="populations" style="font-size:18px;">
<b>Select a group of cell populations:</b>
</label>
<br>
<select name="populations" id="populations">
<option selected="selected" value="Population"> Cell Populations</option>
<option>Lineage</option>
<option>Patient</option>
<option selected="selected" value="Populations"> Cell Populations</option>
<option value="Zone">Prostatic Zone</option>
<option>Patient</option>
</select>
</div>
<br>
<button type="submit" id="analysis" class="btn btn-primary">Run Analysis</button>
<div style="text-align:center">
<button type="submit" id="analysis" class="btn btn-primary">Run Analysis</button>
</div>
<hr>
<div>
<span style="font-size:16px; font-weight:bold;">Experimental details:</span>
......@@ -92,13 +85,13 @@
of three 18-38 year old organ donors using the 10x Genomics platform.
The cells were clustered and identified by correlation of their
transcriptomes to known cell types. Gene expression can be compared by
population identity, cell lineage, patient, or dissected prostatic zone.</span>
population identity, cell lineage, patient, or dissected prostatic zone.
</span>
</div>
</div>
<div align="center">
<h1 id="label.gene">NO GENE SELECTED</h1>
<h2 id="label.lineage"></h2>
<h3 id="label.populations"></h3>
<h2 id="label.populations"></h2>
<div class="columnF">
<h4 id="label.ClusterVis"></h3>
<div class="img">
......@@ -137,6 +130,7 @@
</div>
</body>
{{ partial "footer.html" . }}
<head>
<link rel="stylesheet"
......@@ -153,9 +147,6 @@
}
</style>
<script>
$(function(){
$("#lineage" ).selectmenu({width: 230});
});
$(function(){
$("#populations" ).selectmenu({width: 230});
});
......@@ -178,20 +169,17 @@
}
<!-- alert(_gene) -->
document.getElementById("label.gene").innerHTML = _gene
document.getElementById("label.lineage").innerHTML = $("#lineage").val().toUpperCase() + " Cells"
document.getElementById("label.populations").innerHTML = "Separated by " + $("#populations").val().toUpperCase()
document.getElementById("label.ClusterVis").innerHTML = "Cluster Visualization"
var img = document.getElementById("img.ClusterVis");
img.src="https://s3.us-east-2.amazonaws.com/data-10.1016-j.celrep.2018.11.086/ID/" + $("#lineage").val() + "/" + $("#populations").val() + "/ClusterVis.png"
img.src="https://s3.us-east-2.amazonaws.com/data.images.gse117403.deep/images/" + $("#populations").val() + "/umap.png"
document.getElementById("label.Feature").innerHTML = "Feature Plot"
var img = document.getElementById("img.Feature");
img.src="https://s3.us-east-2.amazonaws.com/data-10.1016-j.celrep.2018.11.086/Feature/" + $("#lineage").val() + "/genes/" + _gene + ".png"
img.src="https://s3.us-east-2.amazonaws.com/data.images.gse117403.deep/images/umap/" + "genes/" + _gene + "_1.png"
document.getElementById("label.ViolinBox").innerHTML = "Violin Box Plot"
var img = document.getElementById("img.ViolinBox");
img.src="https://s3.us-east-2.amazonaws.com/data-10.1016-j.celrep.2018.11.086/ViolinBox/" + $("#lineage").val() + "/" + $("#populations").val() + "/" + _gene + ".png"
img.src="https://s3.us-east-2.amazonaws.com/data.images.gse117403.deep/images/ViolinBox/" + $("#populations").val() + "/genes/" + _gene + "_1.png"
return(_gene)
});
</script>
</head>
{{ partial "footer.html" . }}
\ No newline at end of file
</head>
\ No newline at end of file
layouts/partials/social.html
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<div class="pure-menu social">
<ul class="pure-menu-list">
{{ if .OutputFormats.Get "RSS" }}
<li class="pure-menu-item">
<a class="pure-menu-link" href='{{ with .OutputFormats.Get "RSS" }}{{ .RelPermalink }}{{ end }}'><i
class="fas fa-rss"></i>RSS</a>
</li>
{{ end }}
<!-- SNS microblogging -->
{{ with .Site.Social.twitter }}
......
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