Add CZI hosted cellxgene visualizations

archetypes/sc.data.md

@@ -7,7 +7,10 @@ draft: true
 weight: ""
 type: "custom"
 layout: ""
+cellxgene: false
+cxg_link: ""
 current: true
+location: ""
 ---
 
 **PENDING**
\ No newline at end of file

content/sc.data/PdPgb.md

@@ -7,5 +7,8 @@ draft: false
 weight: "2"
 type: "custom"
 layout: "hu.PdPgb"
+cellxgene: false
+cxg_link: ""
 current: true
+location: ""
 ---

content/sc.data/cellxgene_2018CellReports.md

----
-title: "Human Normal Prostate"
-description: "As published in 2018 Cell Reports (cellxgene: in development)"
-name: "Human Normal Prostate: As published in 2018 Cell Reports"
-date: 2019-12-24T21:46:39-06:00
-draft: false
-weight: "2"
-type: "custom"
-layout: "cellxgene"
-current: false
-location: "PublishedData/2018CellReports/2018CellReports_huPr_all"
----
-

content/sc.data/cellxgene_2020Prostate.PdPgb.md

----
-title: "Human Normal and BPH Prostate Epithelia"
-description: ": As published in 2020 Prostate (cellxgene: in development)"
-name: "Human Normal and BPH Prostate Epithelia: As published in 2020 Prostate"
-date: 2019-12-24T21:46:39-06:00
-draft: false
-weight: "3"
-type: "custom"
-layout: "cellxgene"
-current: false
-location: "PublishedData/2020Prostate/2020Prostate_huPr_PdPgb_epi"
----
-

content/sc.data/cellxgene_2020Prostate.muPrUr.md

----
-title: "Mouse Prostate and Urethral Epithelia"
-description: "As published in 2020 Prostate (cellxgene: in development)"
-name: "Mouse Prostate and Urethral Epithelia: As published in 2020 Prostate"
-date: 2019-12-24T21:46:39-06:00
-draft: false
-weight: "4"
-type: "custom"
-layout: "cellxgene"
-current: false
-location: "PublishedData/2020Prostate/2020Prostate_muPrUr_epi"
----
-

content/sc.data/cellxgene_huPr_PdPgb_epi.md

+---
+title: "Human Normal and BPH Prostate: Epithelial Cells"
+description: "As published in 2020 Prostate (cellxgene)"
+name: "Human Normal and BPH Prostate: Epithelial Cells"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "4"
+type: "custom"
+layout: "cellxgene"
+cellxgene: true
+cxg_link: "https://cellxgene.cziscience.com/d/599b5549-3611-41e1-884f-d5c16b2efd31.cxg"
+current: true
+location: ""
+---
+

content/sc.data/cellxgene_huPr_Pd_all.md

+---
+title: "Human Normal Prostate: All Cells"
+description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
+name: "Human Normal Prostate: All Cells"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "1"
+type: "custom"
+layout: "cellxgene"
+cellxgene: true
+cxg_link: "https://cellxgene.cziscience.com/d/dd811609-3d83-4bdb-801f-d6c6c93d1a9e.cxg"
+current: true
+location: ""
+---
+

content/sc.data/cellxgene_huPr_Pd_epi.md

+---
+title: "Human Normal Prostate: Epithelial Cells"
+description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
+name: "Human Normal Prostate: Epithelial Cells"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "2"
+type: "custom"
+layout: "cellxgene"
+cellxgene: true
+cxg_link: "https://cellxgene.cziscience.com/d/47d05a66-7b83-4439-ad18-180d4c262f7a.cxg"
+current: true
+location: ""
+---
+

content/sc.data/cellxgene_huPr_Pd_fmst.md

+---
+title: "Human Normal Prostate: Fibromuscular Cells"
+description: "As published in 2018 Cell Reports and updated in 2020 The Prostate (cellxgene)"
+name: "Human Normal Prostate: Fibromuscular Cells"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "2"
+type: "custom"
+layout: "cellxgene"
+cellxgene: true
+cxg_link: "https://cellxgene.cziscience.com/d/e0802089-01a0-4e3a-9dbf-03eac64b15d9.cxg"
+current: true
+location: ""
+---
+

content/sc.data/cellxgene_muPrUr_epi.md

+---
+title: "Mouse Prostate and Urethral: Epithelial Cells"
+description: "As published in 2020 The Prostate (cellxgene)"
+name: "Mouse Prostate and Urethral: Epithelial Cells"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "5"
+type: "custom"
+layout: "cellxgene"
+cellxgene: true
+cxg_link: "https://cellxgene.cziscience.com/d/6a2facf2-ea03-407b-b73b-82d582da3930.cxg"
+current: true
+location: ""
+---
+

content/sc.data/hu.Pd.deep.md

@@ -7,7 +7,10 @@ draft: false
 weight: "1"
 type: "custom"
 layout: "hu.Pd.deep"
+cellxgene: false
+cxg_link: ""
 current: true
+location: ""
 aliases: /analysis.php
 ---
 

content/sc.data/muPrUr.md

@@ -7,5 +7,8 @@ draft: false
 weight: "3"
 type: "custom"
 layout: "mu.PrUr"
+cellxgene: false
+cxg_link: ""
 current: true
+location: ""
 ---

layouts/custom/cellxgene.html

@@ -29,7 +29,7 @@
 }
 </style>
 <div class="cellxgene">
-    <iframe name="embed" src="https://cellxgene.strandlab.net/view/{{ .Params.location }}.h5ad/" width="100%" height="100%" frameborder="0" allowfullscreen="" ></iframe>
+    <iframe name="embed" src="{{ .Params.cxg_link }}" width="100%" height="100%" frameborder="0" allowfullscreen="" ></iframe>
 </div>
 <div class="no-cellxgene">
     <h2>Screen width too narrow to display cellxgene</h1>

layouts/custom/sc.data.html

@@ -109,12 +109,19 @@
 </div>
 <div class="content">
     <hr>
+    <h2>Visualization with <a href="https://chanzuckerberg.github.io/cellxgene/">CZI's cellxgene</a></h2>
+    {{ range where .Pages.ByWeight "Params.cellxgene" true }}
+    <li><b><a href="{{.Permalink}}">{{.Params.name}}</a></b></li>
+    {{ end }}
     <br>
-    {{ range where .Pages.ByWeight "Params.current" true }}
+    <hr>
+    <h2>Legacy Visualization</h2>
+    {{ range where .Pages.ByWeight "Params.cellxgene" false }}
     <li><b><a href="{{.Permalink}}">{{.Params.name}}</a></b></li>
     {{ end }}
     <br>
     <hr>
+    <br>
 </div>
 
 <script>