Add cellxgene

content/sc.data/cellxgene_2018CellReports.md

+---
+title: "Human Normal Prostate"
+description: "As published in 2018 Cell Reports (cellxgene: in development)"
+name: "Human Normal Prostate: As published in 2018 Cell Reports"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "2"
+type: "custom"
+layout: "cellxgene"
+current: false
+location: "PublishedData/2018CellReports/2018CellReports_huPr_all"
+---
+

content/sc.data/cellxgene_2020Prostate.PdPgb.md

+---
+title: "Human Normal and BPH Prostate Epithelia"
+description: ": As published in 2020 Prostate (cellxgene: in development)"
+name: "Human Normal and BPH Prostate Epithelia: As published in 2020 Prostate"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "3"
+type: "custom"
+layout: "cellxgene"
+current: false
+location: "PublishedData/2020Prostate/2020Prostate_huPr_PdPgb_epi"
+---
+

content/sc.data/cellxgene_2020Prostate.muPrUr.md

+---
+title: "Mouse Prostate and Urethral Epithelia"
+description: "As published in 2020 Prostate (cellxgene: in development)"
+name: "Mouse Prostate and Urethral Epithelia: As published in 2020 Cell Reports"
+date: 2019-12-24T21:46:39-06:00
+draft: false
+weight: "4"
+type: "custom"
+layout: "cellxgene"
+current: false
+location: "PublishedData/2020Prostate/2020Prostate_muPrUr_epi"
+---
+

content/sc.data/cellxgene_hu.Pd.deep.md

 ---
-title: "Human Donor Prostate (cellxgene)"
-description: "Single-Cell RNA-sequencing Data"
-name: "Human Donor Prostate (cellxgene)"
+title: "Human Normal Prostate"
+description: "Deep Sequencing (cellxgene: in development)"
+name: "Human Normal Prostate: Deep Sequencing"
 date: 2019-12-24T21:46:39-06:00
 draft: false
 weight: "1"
 type: "custom"
-layout: "cellxgene_hu.Pd.deep"
+layout: "cellxgene"
 current: false
+location: "huPr_DEEP/huPr_Pd_all"
 ---
 

content/sc.data/hu.Pd.deep.md

 ---
-title: "Human Donor Prostate"
+title: "Human Normal Prostate"
 description: "Single-Cell RNA-sequencing Data"
-name: "Human Donor Prostate"
+name: "Human Normal Prostate"
 date: 2019-12-24T21:46:39-06:00
 draft: false
 weight: "1"

layouts/custom/cellxgene.html

+{{ partial "header.html" . }}
+
+<div class="header">
+    <h1>{{ .Title }}</h1>
+    <h2>{{ .Description }}</h2>
+</div>
+
+<style>
+    .cellxgene {
+        margin: 0 auto;
+        padding: 0 2em;
+        max-width: 1650px;
+        height: 730px;
+        margin-bottom: 50px;
+    }
+    .no-cellxgene{
+        display: none;
+    }
+@media only screen and (max-width: 1500px) {
+    .cellxgene{
+        display: none;
+    }
+    .no-cellxgene{
+        margin: 0 auto;
+        padding: 0 2em;
+        margin-bottom: 50px;
+        display: inherit;
+    }
+}
+</style>
+<div class="cellxgene">
+    <iframe name="embed" src="http://52.15.203.98:5005/view/{{ .Params.location }}.h5ad/" width="100%" height="100%" frameborder="0" allowfullscreen="" ></iframe>
+</div>
+<div class="no-cellxgene">
+    <h2>Screen width too narrow to display cellxgene</h1>
+</div>
+
+{{ partial "footer.html" . }}
\ No newline at end of file

layouts/custom/cellxgene_hu.Pd.deep.html

-{{ partial "header.html" . }}
-
-<div class="header">
-    <h1>{{ .Title }}</h1>
-    <h2>{{ .Description }}</h2>
-</div>
-
-<style>
-.contents {
-    margin: 0 auto;
-    padding: 0 2em;
-    max-width: 800px;
-    height: 1000px;
-    margin-bottom: 50px;
-    line-height: 1.6em;
-}
-</style>
-<div class="contents">
-    <iframe name="cellxgene-gateway" src="http://198.215.54.107:5005/view/StrandLab/huPr_DEEP/huPr_Pd_all.h5ad/" style="padding: 35px" width="100%" height="100%" frameborder="0" allowfullscreen="" ></iframe>
-</div>
-
-{{ partial "footer.html" . }}
\ No newline at end of file

layouts/custom/sc.data.html

@@ -57,6 +57,7 @@
     <br>
     <hr>
     <br>
+    <h3 style="text-align: center">CZI cellxgene (with Novartis' cellxgene-gateway) for data exploration (in development)</h3>
     {{ range where .Pages.ByWeight "Params.current" false }}
         <li><i><a href="{{.Permalink}}">{{.Params.name}}</a></i></li>
     {{ end }}