Citatoin added.

d8b50560 · Zhiyu Zhao · 5f6e79d6 · d8b50560 · d8b50560 · d8b50560
Commit d8b50560 authored 4 years ago by Zhiyu Zhao
--- a/DB/HILIC GLOBAL LIST HMDB.xlsx
+++ b/DB/HILIC GLOBAL LIST HMDB.xlsx
--- a/DB/HMDB_Detected_and_Quantified.csv
+++ b/DB/HMDB_Detected_and_Quantified.csv
--- a/archived/V1.7.1/ODA_1.7.1.R
+++ b/archived/V1.7.1/ODA_1.7.1.R
--- a/archived/V1.7.1/data_template_1.7.1.xlsm
+++ b/archived/V1.7.1/data_template_1.7.1.xlsm
--- a/archived/V1.7.1/run_analysis.sh
+++ b/archived/V1.7.1/run_analysis.sh
+#!/bin/bash
+if [[ $# < 2 ]]
+then
+	echo "Usage:"
+	echo "sh this_file.sh input_path/input_file_name.xlsx output_path/output_file_name.xlsx optional_BioHPC_queue_name"
+	exit
+fi
+module load R/3.5.1-gccmkl
+DIR=`dirname $0`
+INPUT_FILE=$1
+OUTPUT_FILE=$2
+QUEUE=$3
+if [ "$QUEUE" == "" ]
+then
+	QUEUE=256GB
+fi
+srun -p $QUEUE Rscript $DIR/ODA_1.7.1.R $INPUT_FILE $OUTPUT_FILE
--- a/archived/V1.7.2/ODA.R
+++ b/archived/V1.7.2/ODA.R
--- a/archived/V1.7.2/data_template.xlsm
+++ b/archived/V1.7.2/data_template.xlsm
--- a/archived/V1.7.2/run_analysis.sh
+++ b/archived/V1.7.2/run_analysis.sh
+#!/bin/bash
+if [[ $# < 2 ]]
+then
+	echo "Usage:"
+	echo "sh this_file.sh input_path/input_file_name.xlsx output_path/output_file_name.xlsx optional_BioHPC_queue_name"
+	exit
+fi
+module load R/3.5.1-gccmkl
+DIR=`dirname $0`
+INPUT_FILE=$1
+OUTPUT_FILE=$2
+QUEUE=$3
+if [ "$QUEUE" == "" ]
+then
+	QUEUE=256GB
+fi
+srun -p $QUEUE Rscript $DIR/ODA.R $INPUT_FILE $OUTPUT_FILE