This is an R program to visualize and analyze -omics data such as those from microarray, metabolomics and proteomics experiments. Next-generation sequencing such as RNA-Seq and single-cell RNA-Seq analyses are to be supported in the future. The input of this program is intensity or count data supplied in a list or table along with parameter settings, all in an Excel file. The output is an Excel file with figures and analysis result sheets.
## Current version: 1.7.3. Tested R version: 4.0.2, 3.5.1
## Current version: 1.7.3. Tested R versions: 4.0.2, 3.5.1.
## How to run this tool:
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@@ -22,7 +22,7 @@ sh /path_to_the_program/run_analysis.sh /input_path/your_data_file.xlsx /outp
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2. Running on your local machine. Make sure R is installed and you can run the Rscript command from a command line tool such as a Linux terminal or Windows CMD / PowerShell.
* For the first time running this program, you will need internet access so that the program can auto-download necessary R packages. If you want to install packages to a different directory, find the following line from the ODA.R and change it.