Citation added.

69abcfb9 · Zhiyu Zhao · 7c087791 · 7c087791 · 7c087791 · 7c087791
Commit 69abcfb9 authored 4 years ago by Zhiyu Zhao
--- a/.gitignore
+++ b/.gitignore
-/ODA_Flowchart.docx
-/ODA/archived
-/ODA/DB
--- a/DB/HILIC GLOBAL LIST HMDB.xlsx
+++ b/DB/HILIC GLOBAL LIST HMDB.xlsx
--- a/DB/HMDB_Detected_and_Quantified.csv
+++ b/DB/HMDB_Detected_and_Quantified.csv
--- a/ODA_Flowchart.docx
+++ b/ODA_Flowchart.docx
--- a/archived/V1.7.1/ODA_1.7.1.R
+++ b/archived/V1.7.1/ODA_1.7.1.R
--- a/archived/V1.7.1/data_template_1.7.1.xlsm
+++ b/archived/V1.7.1/data_template_1.7.1.xlsm
--- a/archived/V1.7.1/run_analysis.sh
+++ b/archived/V1.7.1/run_analysis.sh
-#!/bin/bash
-if [[ $# < 2 ]]
-then
-	echo "Usage:"
-	echo "sh this_file.sh input_path/input_file_name.xlsx output_path/output_file_name.xlsx optional_BioHPC_queue_name"
-	exit
-fi
-module load R/3.5.1-gccmkl
-DIR=`dirname $0`
-INPUT_FILE=$1
-OUTPUT_FILE=$2
-QUEUE=$3
-if [ "$QUEUE" == "" ]
-then
-	QUEUE=256GB
-fi
-srun -p $QUEUE Rscript $DIR/ODA_1.7.1.R $INPUT_FILE $OUTPUT_FILE
--- a/archived/V1.7.2/ODA.R
+++ b/archived/V1.7.2/ODA.R
--- a/archived/V1.7.2/data_template.xlsm
+++ b/archived/V1.7.2/data_template.xlsm
--- a/archived/V1.7.2/run_analysis.sh
+++ b/archived/V1.7.2/run_analysis.sh
-#!/bin/bash
-if [[ $# < 2 ]]
-then
-	echo "Usage:"
-	echo "sh this_file.sh input_path/input_file_name.xlsx output_path/output_file_name.xlsx optional_BioHPC_queue_name"
-	exit
-fi
-module load R/3.5.1-gccmkl
-DIR=`dirname $0`
-INPUT_FILE=$1
-OUTPUT_FILE=$2
-QUEUE=$3
-if [ "$QUEUE" == "" ]
-then
-	QUEUE=256GB
-fi
-srun -p $QUEUE Rscript $DIR/ODA.R $INPUT_FILE $OUTPUT_FILE