11132024

V2.2/oda_analysis.sh

@@ -34,10 +34,12 @@ then
 	else
 		echo "CAUTION: Output folder is NOT deleted. New analysis result will be saved in the existing folder. Result files will be overwritten if they have the same names with the previous ones."
 	fi
+else
+	mkdir -p $OUTPUT_FOLDER
 fi
 if [ "$QUEUE" == "local" ]
 then
-	sh $ODA_DIR/run_analysis.sh $ODA_DIR $INPUT_FILE $OUTPUT_FOLDER
+	sh $ODA_DIR/run_analysis.sh $ODA_DIR $INPUT_FILE $OUTPUT_FOLDER 2>&1 | tee -a "$OUTPUT_FOLDER/ODA_run"$(date +%s"."%N)".log"
 else
 	sbatch -p $QUEUE $ODA_DIR/run_analysis.sh $ODA_DIR $INPUT_FILE $OUTPUT_FOLDER
 fi

V2.2/run_analysis.sh

@@ -5,5 +5,5 @@ ODA_MODULE=$ODA_DIR/r_with_packages_4.3.2.sif	#Link to: /archive/CRI/shared/Sing
 INPUT_FILE=$2
 OUTPUT_FOLDER=$3
 echo $ODA_MODULE
-singularity exec $ODA_MODULE Rscript /ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER 2>&1 | tee -a "$OUTPUT_FOLDER/ODA_run"$(date +%s"."%N)".log"
+singularity exec $ODA_MODULE Rscript /ODA/ODA.R $INPUT_FILE $OUTPUT_FOLDER