workflow/clinseq.nf

workflow/main.nf

workflow/main_hla.nf

workflow/scripts/baysic_indel.pl

workflow/scripts/baysic_snp.pl

workflow/scripts/calculate_depthcov.pl

workflow/scripts/integration_vcf_snpindel_highcov.pl

workflow/scripts/parse_seqqc.pl

workflow/scripts/plot_hist_genocov.R

workflow/scripts/subset_bam.pl

workflow/scripts/transvar2bed.pl

workflow/scripts/vcf2basechangePlot.pl

workflow/scripts/vcf2tstvPlot.pl

workflow/scripts/vcf2varianttypePlot.pl

workflow/scripts/vcfstat_plots.pl