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Commit 45035174 authored by Brandi Cantarel's avatar Brandi Cantarel
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missing variable

parent e4132c7e
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Tags publish_0.3.1
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workflow/main.nf
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......@@ -222,7 +222,7 @@ process gatkbam {
gbam
.groupTuple(by:0)
.into { ssbam; sambam; hsbam; strelkabam; platbam }
.into { ssbam; sambam; hsbam; strelkabam; platbam; gkbam }
process svcall {
......@@ -327,7 +327,7 @@ process gatk {
//publishDir "$params.output", mode: 'copy'
input:
set subjid,file(gbam),file(gidx) from gatkbam
set subjid,file(gbam),file(gidx) from gkbam
output:
set subjid,file("${subjid}.platypus.vcf.gz") into gatkvcf
......
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