Commits · master · BICF / Astrocyte / rnaseq

05 Oct, 2020 1 commit
- update main for singularity stat analysis · 6d3d64fe
  Brandi Cantarel authored Oct 05, 2020
  
  6d3d64fe
01 Oct, 2020 1 commit
- update with singularity · 9131c8e0
  Brandi Cantarel authored Oct 01, 2020
  
  9131c8e0
08 Sep, 2020 1 commit
- update for singularity · 5288e775
  Brandi Cantarel authored Sep 08, 2020
  
  5288e775
31 Aug, 2020 1 commit
- update pe/se trim/rna_align · 2d53d37c
  Brandi Cantarel authored Aug 31, 2020
  
  2d53d37c
20 Jul, 2020 1 commit
- update trim for se · 36711f28
  Brandi Cantarel authored Jul 20, 2020
  
  36711f28
26 Jun, 2020 1 commit
- change url to git@ modules · ff1544dd
  Brandi Cantarel authored Jun 26, 2020
  
  ff1544dd
22 May, 2020 2 commits
- update genect_rnaseq/statanal.sh · fa94e3bb
  Brandi Cantarel authored May 22, 2020
  
  fa94e3bb
- update process_scripts · e61e9861
  Brandi Cantarel authored May 22, 2020
  
  e61e9861
09 Apr, 2020 2 commits
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/rnaseq · 1ac0c0fc
  Brandi Cantarel authored Apr 09, 2020
  
  1ac0c0fc
- update from clinseq;move submodule · 1968a2e5
  Brandi Cantarel authored Apr 09, 2020
  
  1968a2e5
07 Jan, 2020 2 commits
- Merge branch '19-astrocyte_doc' into 'master' · aac993e7
  Venkat Malladi authored Jan 07, 2020
```
Fix documentationn for choosing only fastq files.

Closes #19

See merge request !9
```
  aac993e7
- Fix documentationn for choosing only fastq files. · 2e1df269
  Venkat Malladi authored Jan 07, 2020
  
  2e1df269
21 Oct, 2019 1 commit
- update stringtie · b2fdf539
  Brandi Cantarel authored Oct 21, 2019
  
  b2fdf539
28 Aug, 2019 1 commit
- Merge branch '18-ErrorStratagy' into 'master' · 75e3b284
  Venkat Malladi authored Aug 28, 2019
```
add in error strategy

Closes #18

See merge request !8
```
  75e3b284
27 Aug, 2019 1 commit
- add in error strategy · 7ff15f77
  Jeremy Mathews authored Aug 27, 2019
  
  7ff15f77
08 Jul, 2019 1 commit
- Merge branch '15-CheckInputFiles' into 'master' · 7c2ae90f
  Brandi Cantarel authored Jul 08, 2019
```
Resolve "Check file inputs"

Closes #15 and #16

See merge request !7
```
  7c2ae90f
27 Jun, 2019 2 commits
- Change path for geneset mouse in gitlab-ci.yml file · 888e1ee4
  Jeremy Mathews authored Jun 27, 2019
  
  888e1ee4
- Fix check design file to not die · 468ff7a8
  Jeremy Mathews authored Jun 27, 2019
  
  468ff7a8
20 Jun, 2019 8 commits
- Merge branch 'master' into 15-CheckInputFiles · 87bd5bfe
  Jeremy Mathews authored Jun 20, 2019
  
  87bd5bfe
- Fix process scripts v4 · bcdf5ef4
  Jeremy Mathews authored Jun 20, 2019
  
  bcdf5ef4
- process scripts v3 · 2a0fbe4b
  Jeremy Mathews authored Jun 20, 2019
  
  2a0fbe4b
- process scripts v3 · 300179f9
  Jeremy Mathews authored Jun 20, 2019
  
  300179f9
- Fix process scripts issue v2 · e78d8119
  Jeremy Mathews authored Jun 20, 2019
  
  e78d8119
- Fix process scripts issue v2 · 8c3fdfe0
  Jeremy Mathews authored Jun 20, 2019
  
  8c3fdfe0
- Fix process scripts issue · 253e634d
  Jeremy Mathews authored Jun 20, 2019
  
  253e634d
- File Name Check · e7ad35bc
  Jeremy Mathews authored Jun 20, 2019
  
  e7ad35bc
17 Jun, 2019 1 commit
- Test File Input - Process Error · 3caba697
  Jeremy Mathews authored Jun 17, 2019
  
  3caba697
12 Jun, 2019 1 commit
- Check Input Fastq Files · 5fc25b2c
  Jeremy Mathews authored Jun 12, 2019
  
  5fc25b2c
11 Jun, 2019 3 commits
- Merge branch '14-CI' into 'master' · cc35440c
  Brandi Cantarel authored Jun 11, 2019
```
Resolve "Fix CI"

Closes #14

See merge request !6
```
  cc35440c
- fix CI yml · 2b7402e8
  Jeremy Mathews authored Jun 11, 2019
  
  2b7402e8
- Fix CI · 5058b6cb
  Jeremy Mathews authored Jun 11, 2019
  
  5058b6cb
30 May, 2019 1 commit
- update dea.R round counts · 55b54dc6
  Brandi Cantarel authored May 30, 2019
  
  55b54dc6
22 May, 2019 2 commits
- Merge branch 'master' of git.biohpc.swmed.edu:BICF/Astrocyte/rnaseq · 870eff5e
  Brandi Cantarel authored May 22, 2019
  
  870eff5e
- update starfusion and rnaseqalign.sh · 925c4582
  Brandi Cantarel authored May 22, 2019
  
  925c4582
03 May, 2019 1 commit
- Update .gitlab-ci.yml · 0e3599b7
  Brandi Cantarel authored May 03, 2019
  
  0e3599b7
02 May, 2019 3 commits
- adding new trinity · 88e1f22f
  Brandi Cantarel authored May 02, 2019
  
  88e1f22f
- deleting dedundant code · 10a9e70c
  Brandi Cantarel authored May 02, 2019
  
  10a9e70c
- Merge branch '8_documentation' into 'master' · d33d1b65
  Brandi Cantarel authored May 02, 2019
```
documentation update on design file explanation

See merge request !5
```
  d33d1b65
26 Apr, 2019 1 commit
- Merge branch '11-deafix_heatmap' into 'master' · 728e7bdd
  Venkat Malladi authored Apr 26, 2019
```
updated submodules process_scripts

Closes #11

See merge request !4
```
  728e7bdd
19 Apr, 2019 1 commit
- updated submodules process_scripts · f45dea2b
  Holly Ruess authored Apr 19, 2019
  
  f45dea2b