adding new trinity

88e1f22f · Brandi Cantarel · 10a9e70c · 88e1f22f
Commit 88e1f22f authored May 02, 2019 by Brandi Cantarel
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workflow/main.nf workflow/main.nf +1 -1

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--- a/workflow/main.nf
+++ b/workflow/main.nf
@@ -104,7 +104,7 @@ process starfusion {
  params.fusion == 'detect' && params.pairs == 'pe'
  script:
  """
-  bash $baseDir/process_scripts/alignment/starfusion.sh -p ${pair_id} -r ${index_path} -a ${fq1} -b ${fq2}
+  bash $baseDir/process_scripts/alignment/starfusion.sh -p ${pair_id} -r ${index_path} -a ${fq1} -b ${fq2} -m trinity -f
  """
 }