Commit 88e1f22f authored by Brandi Cantarel's avatar Brandi Cantarel

adding new trinity

parent 10a9e70c
Pipeline #3792 failed with stage
in 0 seconds
......@@ -104,7 +104,7 @@ process starfusion {
params.fusion == 'detect' && params.pairs == 'pe'
script:
"""
bash $baseDir/process_scripts/alignment/starfusion.sh -p ${pair_id} -r ${index_path} -a ${fq1} -b ${fq2}
bash $baseDir/process_scripts/alignment/starfusion.sh -p ${pair_id} -r ${index_path} -a ${fq1} -b ${fq2} -m trinity -f
"""
}
......
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