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BICF
Astrocyte
rnaseq
Commits
87256997
Commit
87256997
authored
Mar 15, 2018
by
Brandi Cantarel
Browse files
gitlab update
parent
1d13db11
Pipeline
#1664
failed with stage
in 34 seconds
Changes
1
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1
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.gitlab-ci.yml
View file @
87256997
...
...
@@ -7,6 +7,7 @@ variables:
before_script
:
-
module load nextflow/0.27.6
-
ln -s /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq test_data
stages
:
-
integration
...
...
@@ -14,13 +15,13 @@ stages:
test_human
:
stage
:
integration
script
:
-
nextflow run workflow/main.nf --design test
_
data/design.rnaseq.txt --input test
_
data --output human_output
-
nextflow run workflow/main.nf --design
/project/shared/bicf_workflow_ref/workflow_
testdata/
rnaseq/
design.rnaseq.txt --input
/project/shared/bicf_workflow_ref/workflow_
testdata
/rnaseq
--output human_output
artifacts
:
expire_in
:
2 days
test_mouse
:
stage
:
integration
script
:
-
nextflow run workflow/main.nf --input test
_
data --design test
_
data/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups
null
--output mouse_output
-
nextflow run workflow/main.nf --input
/project/shared/bicf_workflow_ref/workflow_
testdata
/rnaseq
--design
/project/shared/bicf_workflow_ref/workflow_
testdata/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/GRCm38 --markdups
null
--output mouse_output
artifacts
:
expire_in
:
2 days
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