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BICF
Astrocyte
rnaseq
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60c99529
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60c99529
authored
3 years ago
by
Hololens Test
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Update .gitlab-ci.yml
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3b5cae03
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View file @
60c99529
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@@ -23,13 +23,13 @@ astrocyte_check:
test_human
:
stage
:
test_human
script
:
-
nextflow run -c workflow/configs/nextflow.config -with-dag flowchart.png -with-timeline human_timeline.html -with-report human_report.html workflow/main.nf --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/design.rnaseq.txt --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --output human_output
-
nextflow
-bg
run -c workflow/configs/nextflow.config -with-dag flowchart.png -with-timeline human_timeline.html -with-report human_report.html workflow/main.nf --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/design.rnaseq.txt --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --output human_output
artifacts
:
expire_in
:
2 days
test_mouse
:
stage
:
test_mouse
script
:
-
nextflow run -c workflow/configs/nextflow.config -with-dag flowchart.png -with-timeline mouse_timeline.html -with-report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/mouse/GRCm38 --markdups
null
--output mouse_output
-
nextflow
-bg
run -c workflow/configs/nextflow.config -with-dag flowchart.png -with-timeline mouse_timeline.html -with-report mouse_report.html workflow/main.nf --input /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq --design /project/shared/bicf_workflow_ref/workflow_testdata/rnaseq/mouse_se.design.txt --pairs se --fusion skip --genome /project/shared/bicf_workflow_ref/mouse/GRCm38 --markdups
null
--output mouse_output
artifacts
:
expire_in
:
2 days
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