Commit 19ca68db authored by Brandi Cantarel's avatar Brandi Cantarel

updating process scripts

parent e550dccd
Pipeline #2594 failed with stage
## RNASeq Analysis Worklow
```
module load nextflow/0.24.1-SNAPSHOT
module load nextflow
nextflow run workflow/main.nf
```
......@@ -201,14 +201,15 @@ process statanal {
file "*.txt" into txtfiles
file "*.png" into psfiles
file("bg.rda") into rdafiles
file("geneset.shiny.gmt") into gmtfile
when:
script:
if (params.dea == 'skip')
"""
perl $baseDir/scripts/concat_cts.pl -o ./ *.cts
perl $baseDir/scripts/concat_fpkm.pl -o ./ *.fpkm.txt
touch empty.png
touch bg.rda
cp geneset.gmt geneset.shiny.gmt
"""
else
"""
......
Subproject commit 636e989b65cc76352111cedac9a8762fbe570384
Subproject commit 75a4aa688f82c607794e109e4ee0ec8e12418a2d
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