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Created with Raphaël 2.2.027Dec26252417162Nov131Oct14Aug1311226Jul252429Jun2726258May16Mar1515Feb1413Jan121110529Nov21201918171615141031Oct30292827262524232220181711109876543130Sep28272620131289May26Apr25242115Mar310Feb83231Jan262529Dec2728Nov218Add test for motif search output.Check differential peaks.Remove testing design string.Fix tests so they run on single end and paired end.Fix motif search and limit number of peaks.Remove output and rename touched files.Update script name, R version and end result.Fix program description.Change R version and output.Fix our file name Termite annodbAdd missing librariesRemove extra parathesisTest annotate peaks.Add in paired end test data.Added in test data for comparisions.Defaulted to zcat instead of unzip file.Update motif search scripts to meet new python standardsMerge branch 'master' into 15_Annotation_diff_bindRever changes.Add missing deeptools script.publish_0.0.16publish_0.0.16Fix Beibei's version of pipeline.publish_0.0.15publish_0.0.15Revert changes.Add in old main.nf to fix organism in chipseeker.publish_0.0.14publish_0.0.14Revert mainFix current chip-seq pipeline.Add proper syntax.Fix syntax and readlines.New test.Fix reading experiment files.Change to just size.Change to new conventions.Upgrade nextflow version.Fix channel.Add in paired end tests for calling peaks.Fix diffBind output.Add in Resume option.Hardcode to 2.Fix syntax.Fix diffbind.