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Created with Raphaël 2.2.012Mar11109875Feb31Jan2522191815141312111098765427Dec26252417162Nov131Oct14Aug1311226Jul252429Jun2726258May16Mar1515Feb1413Jan121110529Nov21201918171615141031Oct30292827262524232220181711109876543130Sep28272620131289May26Apr25242115Mar310Feb83231Jan262529Dec2728Nov218Fix output.Update process name.Remove references.Fix main.Changed name to replicatedPeaks.Fix sytnax of processes.Fix config.Fix syntax.Add in software report generation.Generate software report.Move skip to first.Change overlap peaks back to original.Fix test output.Update software report and generate references.Flake8 code.Update to python standards.Add in references.mdFix spacing.Merge branch 'master' into 21-software_versionsMerge branch 'master' into 31-skip_stepsFirst Multiqc config.Merge branch '23-rename_output' into 'master'Add in software versions.Fix stage of test.Update tests and add a skip test that only runs on branches.Add in skipping of diffBind and motif search.Only run certain tests on branches vs master.Fix diff peaks output for single end.Remove subprocess.Add in software version parsing.Fix test output.Remove extra bwa command.Fix rename.Pin versions with corrected syntax.Pin versions.;Update items to install.Add in correct shuffle step. Fix output directory. #28.Update where test files are coming from.Update git ignore.