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Created with Raphaël 2.2.015Feb12111028Jan26Sep171612316Aug141286131Jul3026252423221918171615121110983231May302928241716151465229Apr2623222120191817161520Mar1917161514131211109875Feb31Jan2522191815141312111098765427Dec26252417162Nov131Oct14Aug1311226Jul252429Jun2726258May16Mar1515Feb1413Jan121110529Nov21201918171615141031Oct30292827262524232220181711109876543130Sep2827262013128update reference.Update plot profile name.Changed singularity container to allow for rendering of references.Update changelog.Update changelog.Add in Changelog.Update software version test python.Test data for single control single replicate.Solve the minimum fragment length to be at least 50bp or through an error.Merge branch 'master' into 26-negative-fraglengthRemove resume.Remove resume.Fix logic if paired-end and single replicate.Fix adding path. Not needed if file is the same.Fix design file.Remove extra test section. Also fix design file.Add a single control end-end test.Remove git ignore.Merge branch '68-remove_artifacts' into 'master'Remove artifacts.Merge branch '65-test_failing' into 'master'Update changelog.Update paired-end diff to skip this test.Merge branch '30-XCor' into 'master'Update cross correlation and related testsadd -p option for plot profileUpdate testsMake Multiqc using singularityUpdate tests for xcor changeMerge branch '47-AnnotatePeaks' into 'master'Fix biohpc.configFix and test use of GTF and Genename paramsFix PE annotate peaks assertion in pytestChange Annotate Peaks to GTF file referenceMerge branch '58-single-rep' into 'master'Final Revision: Remove If-Else Statement (Redundant)make df from dictnew runfix spacing againfix spacing