Merge requests · BICF / Astrocyte / chipseq_analysis

Merge trains

Update astrocyte to 0.3.1 0 of 3 checklist items completed

!71 · created Jun 29, 2020 by Venkat Malladi 2.0.0
documentation enhancement
- Merged
- 1
updated Jul 01, 2020
Resolve "Paired-end Diffbind peaks gives different answer" after changing random 2 of 2 checklist items completed

!69 · created Apr 17, 2020 by Venkat Malladi 1.1.0 master
Test bug
updated Apr 20, 2020
Resolve "Rename Plot profile to be consistent with naming" 4 of 4 checklist items completed

!67 · created Mar 21, 2020 by Venkat Malladi 1.1.0
Test
- Merged
- 2
updated Apr 21, 2020
Update to test with new astrocyte runner. 0 of 4 checklist items completed

!66 · created Mar 19, 2020 by Venkat Malladi 1.1.0 master
- Merged
- 1
updated Mar 21, 2020
Changed singularity container to allow for rendering of references. 3 of 3 checklist items completed

!65 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Feb 18, 2020
Resolve "Python Version not in Software Version" 3 of 3 checklist items completed

!64 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Mar 02, 2020
Resolve "Single Rep Pool and Pseudo" 3 of 3 checklist items completed

!63 · created Feb 12, 2020 by Venkat Malladi 1.1.0 master
bug
- Merged
- 3
updated Mar 24, 2020
Resolve "callPeaksMACS exits when data is bad" 3 of 3 checklist items completed

!62 · created Feb 12, 2020 by Venkat Malladi 1.1.1 master
bug
updated Feb 29, 2020
Remove artifacts.

!61 · created Jan 28, 2020 by Venkat Malladi 1.1.1 master
bug
- Merged
updated Jan 28, 2020
Update paired-end diff to skip this test. 3 of 3 checklist items completed

!60 · created Sep 16, 2019 by Venkat Malladi 1.1.1 master
bug
updated Sep 17, 2019
Resolve "xcor.py, --random-source fails if file is too small" 3 of 3 checklist items completed

!58 · created Aug 27, 2019 by Jeremy Mathews 1.1.1 master
- Merged
- 6
updated Sep 12, 2019
Resolve "annotate peaks" 3 of 3 checklist items completed

!57 · created Aug 05, 2019 by Jeremy Mathews 1.1.1 master
enhancement
- Merged
- 2
updated Aug 12, 2019
Resolve "add plotProfile" 5 of 5 checklist items completed

!55 · created Jul 18, 2019 by Jeremy Mathews 1.1.1 master
enhancement
- Merged
- 4
updated Jul 19, 2019
Resolve "Single control or experiment fails at call peaks macs" 4 of 4 checklist items completed

!54 · created Jul 12, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Merged
- 2
updated Jul 30, 2019
Update gitignore with nextflow and update software reference test

!53 · created Jul 10, 2019 by Jeremy Mathews 1.0.6 master
enhancement
updated Jul 10, 2019
Issues #57 and #59 cause Spencer said today 3 of 3 checklist items completed

!50 · created Jul 08, 2019 by Jeremy Mathews 1.0.6 master
enhancement
- Merged
- 1
updated Jul 09, 2019
Fix fasta file refernce and add check for correct genome version 6 of 6 checklist items completed

!49 · created May 31, 2019 by Jeremy Mathews 1.0.6 master
bug enhancement
updated May 31, 2019
Resolve "Astrocyte Bug Fixes" 3 of 3 checklist items completed

!46 · created May 16, 2019 by Venkat Malladi 1.0.4 master
bug
updated May 16, 2019
Resolve "Change Tests for Peak comparison to be greater than or equal to"

!44 · created May 15, 2019 by Venkat Malladi 1.0.4 master
enhancement
updated May 15, 2019
updated script pool_and_psuedoreplicates

!43 · created May 15, 2019 by Venkat Malladi 1.0.4 master
bug
updated May 15, 2019