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Resolve "Bam Stats and Filter"

Merged Venkat Malladi requested to merge 4-stat-filter into master

Closes #4 (closed)

Adds in BAM filter, Dedup and QC.

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Pipeline #1060 passed

Pipeline passed for f4b48e0b on 4-stat-filter

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Merged by (Jan 3, 2025 2:08pm UTC)

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Pipeline #1061 passed

Pipeline passed for 674ba19c on master

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