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chipseq_analysis
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!5
Resolve "Add mapping and trimming"
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Resolve "Add mapping and trimming"
3-mapping-trimming
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master
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Venkat Malladi
requested to merge
3-mapping-trimming
into
master
7 years ago
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fe645c1a
Add in place holders for testing trim reads.
· fe645c1a
Venkat Malladi
authored
7 years ago
workflow/tests/test_trim_reads.py
0 → 100644
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#!/usr/bin/env python3
import
pytest
import
os
import
gzip
def
test_trim_reads_singleend
():
# assert os.path.getsize('sample1_R1.fastq.gz') != os.path.getsize('sample1_R1.trim.fastq.gz')
# check the size of the lines using
# a = sum(1 for _ in gzip.open('input_2.small_R1.fastq.gz'))
pass
def
test_trim_reads_pairedend
():
# Do the same thing for paired end data
pass