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Resolve "Add mapping and trimming"

Merged Venkat Malladi requested to merge 3-mapping-trimming into master
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@@ -8,8 +8,8 @@ def test_map_reads_singleend():
aligned_reads_report = os.path.dirname(os.path.abspath(__file__)) + \
'/../output/alignReads/ENCFF646LXU.srt.bam.flagstat.qc'
samtools_report = open(aligned_reads_report).readlines()
assert '80795025' in samtools_report[1]
assert '80050072' in samtools_report[5]
assert '80795025 + 0 in total' in samtools_report[0]
assert '80050072 + 0 mapped (99.08% : N/A)' in samtools_report[4]
def test_map_reads_pairedend():