Resolve "Add in current chip-analysis functionality."

Closes #15 (closed)

workflow/tests/test_call_peaks_macs.py

@@ -18,5 +18,7 @@ def test_call_peaks_macs_singleend():
 
 @pytest.mark.integration
 def test_call_peaks_macs_pairedend():
-    # Do the same thing for paired end data
-    pass
+    assert os.path.exists(os.path.join(test_output_path, 'ENCLB568IYX.fc_signal.bw'))
+    assert os.path.exists(os.path.join(test_output_path, 'ENCLB568IYX.pvalue_signal.bw'))
+    peak_file = test_output_path + 'ENCLB568IYX_peaks.narrowPeak'
+    assert utils.count_lines(peak_file) == 112652