Commits · ff9999f2364acf383390ad6b5fb0f135660ce2e6 · BICF / Astrocyte / chipseq_analysis

Mar 08, 2019
- Add in software version parsing. · ff9999f2
  Venkat Malladi authored 6 years ago
  
  ff9999f2
Jan 14, 2019
- Update tests and output file names. · 2b651306
  Venkat Malladi authored 6 years ago
  
  2b651306
Jan 11, 2019
- Fix cod syntax. · b47a158e
  Venkat Malladi authored 6 years ago
  
  b47a158e
Jan 06, 2019
- Update mapped reads with sample id. · 4c3add75
  Venkat Malladi authored 6 years ago
  
  4c3add75
Oct 25, 2017
- Fix syntax of get_args across all scripts. · 648dc44d
  Venkat Malladi authored 7 years ago
  
  648dc44d
Oct 08, 2017
- Cleanup code after flake8. · daaf631d
  Venkat Malladi authored 7 years ago
  
  daaf631d
- generatlized strip_extension and added tests. · cc0b8e05
  Venkat Malladi authored 7 years ago
  
  cc0b8e05
- Fix bwa aln variables. · 34f899e0
  Venkat Malladi authored 7 years ago
  
  34f899e0
- Fix bam syntax and file name. · c7af593e
  Venkat Malladi authored 7 years ago
  
  c7af593e
Oct 07, 2017
- Fix order of sai and fastq arguments. · 1b918e88
  Venkat Malladi authored 7 years ago
  
  1b918e88
- update the naming of the reads. · 3d77cb5b
  Venkat Malladi authored 7 years ago
  
  3d77cb5b
- update samtools flagstat and name of outfile · 2e634083
  Venkat Malladi authored 7 years ago
  
  2e634083
Oct 06, 2017
- Fix missing variable and naming conventions. · 6a389e7f
  Venkat Malladi authored 7 years ago
  
  6a389e7f
- Add in trace config and fix varaible of map_reads. · 0205044c
  Venkat Malladi authored 7 years ago
  
  0205044c
- Fix file used in first step. · 08898dde
  Venkat Malladi authored 7 years ago
  
  08898dde
- Fix missing libraries and use of python3. · 861b7993
  Venkat Malladi authored 7 years ago
  
  861b7993
Oct 05, 2017
- Add in maping step with apporpriate configurations. · 14299993
  Venkat Malladi authored 7 years ago
  
  14299993