Commits · acebeb68fcbaeb6f7c107e225972edcbab875101 · BICF / Astrocyte / chipseq_analysis

Oct 31, 2018
- Revert main · acebeb68
  Venkat Malladi authored 6 years ago
  
  acebeb68
- Fix current chip-seq pipeline. · 2d887a76
  Venkat Malladi authored 6 years ago
  
  2d887a76
Aug 14, 2018
- Add proper syntax. · f44b0481
  Venkat Malladi authored 6 years ago
  
  f44b0481
- Fix syntax and readlines. · 6a2d842c
  Venkat Malladi authored 6 years ago
  
  6a2d842c
- New test. · a0568644
  Venkat Malladi authored 6 years ago
  
  a0568644
- Fix reading experiment files. · 3df606ed
  Venkat Malladi authored 6 years ago
  
  3df606ed
- Change to just size. · c0d36466
  Venkat Malladi authored 6 years ago
  
  c0d36466
- Change to new conventions. · 035156b7
  Venkat Malladi authored 6 years ago
  
  035156b7
- Upgrade nextflow version. · 998c2bd7
  Venkat Malladi authored 6 years ago
  
  998c2bd7
- Fix channel. · eea2f6f3
  Venkat Malladi authored 6 years ago
  
  eea2f6f3
- Add in paired end tests for calling peaks. · e3a0a043
  Venkat Malladi authored 6 years ago
  
  e3a0a043
Aug 13, 2018
- Fix diffBind output. · ffbb85b0
  Venkat Malladi authored 6 years ago
  
  ffbb85b0
- Add in Resume option. · fe188a10
  Venkat Malladi authored 6 years ago
  
  fe188a10
Aug 11, 2018
- Hardcode to 2. · 2b4d340c
  Venkat Malladi authored 6 years ago
  
  2b4d340c
- Fix syntax. · c9b2fa2e
  Venkat Malladi authored 6 years ago
  
  c9b2fa2e
- Fix diffbind. · 1bc7294b
  Venkat Malladi authored 6 years ago
  
  1bc7294b
- First pass at updating documentation. · 7795c421
  Venkat Malladi authored 6 years ago
  
  7795c421
- Fix library issues for R. · 0e768b53
  Venkat Malladi authored 6 years ago
  
  0e768b53
- Update samtools. · 805590f5
  Venkat Malladi authored 6 years ago
  
  805590f5
- Add in experiment qc for paired-end data. · faad8b58
  Venkat Malladi authored 6 years ago
  
  faad8b58
- Add in test cross-correlation. · 7bbb0bbd
  Venkat Malladi authored 6 years ago
  
  7bbb0bbd
- Assert paired end files exist. · a8c27eae
  Venkat Malladi authored 6 years ago
  
  a8c27eae
- Add in paired-end filter test. · 58b92f5d
  Venkat Malladi authored 6 years ago
  
  58b92f5d
- Add in paried-end reads test for alignment. · e9328bd2
  Venkat Malladi authored 6 years ago
  
  e9328bd2
- Add in trim reads paired end. · c7a09e6c
  Venkat Malladi authored 6 years ago
  
  c7a09e6c
Aug 02, 2018
- Merge branch '18_Samtools_Update' into 'master' · 6a418e0f
  Venkat Malladi authored 6 years ago
```
updated all processes to use samtools/1.6

See merge request !14
```
  6a418e0f
Jul 26, 2018
- updated all processes to use samtools/1.6 · 98315769
  Jonathan Gesell authored 6 years ago
  
  98315769
Jul 25, 2018
- Test · 0b4b9966
  Venkat Malladi authored 6 years ago
  
  0b4b9966
- Fix syntax · b8564cfe
  Venkat Malladi authored 6 years ago
  
  b8564cfe
- Fix syntax · 46e7e5e3
  Venkat Malladi authored 6 years ago
  
  46e7e5e3
- Fix syntax · f6184625
  Venkat Malladi authored 6 years ago
  
  f6184625
- Fix path · 11628381
  Venkat Malladi authored 6 years ago
  
  11628381
- Fix readlines. · f4e07f44
  Venkat Malladi authored 6 years ago
  
  f4e07f44
- Fix workflow. · 2ede9219
  Venkat Malladi authored 6 years ago
  
  2ede9219
- add in motif search. · 5198436d
  Venkat Malladi authored 6 years ago
  
  5198436d
Jul 24, 2018
- Covert csv to tsv. · 65bc6b76
  Venkat Malladi authored 6 years ago
  
  65bc6b76
- Add in differntial binding peaks. · 7b67dda5
  Venkat Malladi authored 6 years ago
  
  7b67dda5
- Update annotation script. · 7deea97e
  Venkat Malladi authored 6 years ago
  
  7deea97e
- Merge branch 'master' into 15_Annotation_diff_bind · 0620eafd
  Venkat Malladi authored 6 years ago
  
  0620eafd
Jun 29, 2018
- Update biohpc.config to deal with queue · a52d2a8c
  Venkat Malladi authored 6 years ago
  
  publish_0.0.13
  
  a52d2a8c