Commits · 280550d3de5b1190f956391556dc474554c694e0 · BICF / Astrocyte / chipseq_analysis

Jan 18, 2019
- add Pearson Correlation, make plots pdf · e78c5af1
  Holly Ruess authored 6 years ago
  
  e78c5af1
Jan 14, 2019
- Fix output directories and file names. · 21aac926
  Venkat Malladi authored 6 years ago
  
  21aac926
Jan 07, 2019
- Remove space. · 123c177c
  Venkat Malladi authored 6 years ago
  
  123c177c
Jan 06, 2019
- Fix names in motif search and adding summits files. · db7110cb
  Venkat Malladi authored 6 years ago
  
  db7110cb
- Add summits and remove extra names in files. · e1f7f61b
  Venkat Malladi authored 6 years ago
  
  e1f7f61b
- Update file names and output for filter reads. · cf00e0e5
  Venkat Malladi authored 6 years ago
  
  cf00e0e5
- Fix test options and files that should be moved over. · 3a0ac094
  Venkat Malladi authored 6 years ago
  
  3a0ac094
- fix missing genome params and annotate peaks syntax. · cde5c10a
  Venkat Malladi authored 6 years ago
  
  cde5c10a
- Update mapped reads with sample id. · 4c3add75
  Venkat Malladi authored 6 years ago
  
  4c3add75
- Change fastq's to be new sample names as defined by the sample_id. · cec86acd
  Venkat Malladi authored 6 years ago
  
  cec86acd
- Update outdir default. · 22db60b0
  Venkat Malladi authored 6 years ago
  
  22db60b0
- Remove test code. · ac16a48e
  Venkat Malladi authored 6 years ago
  
  ac16a48e
- Change output of diffPeaks design file. · 83e1537d
  Venkat Malladi authored 6 years ago
  
  83e1537d
Jan 05, 2019
- Add option for outdir. · 6cbc074d
  Venkat Malladi authored 6 years ago
  
  6cbc074d
- Test for new unique experiment determination. · 4a27bcf5
  Venkat Malladi authored 6 years ago
  
  4a27bcf5
- Change order of process. Made diffPeaks a when opperative. · 92096435
  Venkat Malladi authored 6 years ago
  
  92096435
Jan 04, 2019
- Fix paried-end quality output options. · 74e367c1
  Venkat Malladi authored 6 years ago
  
  74e367c1
- Fix memechip output directoires. · 673c0718
  Venkat Malladi authored 6 years ago
  
  673c0718
Dec 27, 2018
- Fix motif search and limit number of peaks. · 813fb41d
  Venkat Malladi authored 6 years ago
  
  813fb41d
Dec 26, 2018
- Remove output and rename touched files. · 6de1721c
  Venkat Malladi authored 6 years ago
  
  6de1721c
- Update script name, R version and end result. · 6f6aa9d5
  Venkat Malladi authored 6 years ago
  
  6f6aa9d5
Dec 24, 2018
- Added in test data for comparisions. · cf982549
  Venkat Malladi authored 6 years ago
  
  cf982549
Dec 16, 2018
- Update motif search scripts to meet new python standards · e2f0afca
  Venkat Malladi authored 6 years ago
  
  e2f0afca
Nov 02, 2018
- Rever changes. · 7b165eab
  Venkat Malladi authored 6 years ago
  
  7b165eab
Nov 01, 2018
- Fix Beibei's version of pipeline. · c011b6a1
  Venkat Malladi authored 6 years ago
  
  publish_0.0.15
  
  c011b6a1
Oct 31, 2018
- Revert changes. · df14067f
  Venkat Malladi authored 6 years ago
  
  df14067f
- Add in old main.nf to fix organism in chipseeker. · bb5a6702
  Venkat Malladi authored 6 years ago
  
  publish_0.0.14
  
  bb5a6702
- Revert main · acebeb68
  Venkat Malladi authored 6 years ago
  
  acebeb68
- Fix current chip-seq pipeline. · 2d887a76
  Venkat Malladi authored 6 years ago
  
  2d887a76
Aug 14, 2018
- Add proper syntax. · f44b0481
  Venkat Malladi authored 6 years ago
  
  f44b0481
- Fix syntax and readlines. · 6a2d842c
  Venkat Malladi authored 6 years ago
  
  6a2d842c
- New test. · a0568644
  Venkat Malladi authored 6 years ago
  
  a0568644
- Fix reading experiment files. · 3df606ed
  Venkat Malladi authored 6 years ago
  
  3df606ed
- Change to just size. · c0d36466
  Venkat Malladi authored 6 years ago
  
  c0d36466
- Fix channel. · eea2f6f3
  Venkat Malladi authored 6 years ago
  
  eea2f6f3
Aug 13, 2018
- Fix diffBind output. · ffbb85b0
  Venkat Malladi authored 6 years ago
  
  ffbb85b0
Aug 11, 2018
- Hardcode to 2. · 2b4d340c
  Venkat Malladi authored 6 years ago
  
  2b4d340c
- Fix syntax. · c9b2fa2e
  Venkat Malladi authored 6 years ago
  
  c9b2fa2e
- Fix diffbind. · 1bc7294b
  Venkat Malladi authored 6 years ago
  
  1bc7294b
Jul 25, 2018
- Test · 0b4b9966
  Venkat Malladi authored 6 years ago
  
  0b4b9966